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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-220164733-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=220164733&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PM2",
"PP3_Moderate",
"PP5"
],
"effects": [
"missense_variant",
"splice_region_variant"
],
"gene_symbol": "RAB3GAP2",
"hgnc_id": 17168,
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"inheritance_mode": "AR",
"pathogenic_score": 5,
"score": 5,
"transcript": "NM_012414.4",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate,PP5",
"acmg_score": 5,
"allele_count_reference_population": 1,
"alphamissense_prediction": "Pathogenic",
"alphamissense_score": 0.9354,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Pathogenic",
"bayesdelnoaf_score": 0.31,
"chr": "1",
"clinvar_classification": "Pathogenic",
"clinvar_disease": "Martsolf syndrome,Martsolf syndrome 1",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "O:1",
"computational_prediction_selected": "Pathogenic",
"computational_score_selected": 0.9690753221511841,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1393,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7256,
"cdna_start": 3270,
"cds_end": null,
"cds_length": 4182,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "NM_012414.4",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000358951.7",
"protein_coding": true,
"protein_id": "NP_036546.2",
"strand": false,
"transcript": "NM_012414.4",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1393,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 7256,
"cdna_start": 3270,
"cds_end": null,
"cds_length": 4182,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000358951.7",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_012414.4",
"protein_coding": true,
"protein_id": "ENSP00000351832.2",
"strand": false,
"transcript": "ENST00000358951.7",
"transcript_support_level": 1
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1418,
"aa_ref": "G",
"aa_start": 1077,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5533,
"cdna_start": 3389,
"cds_end": null,
"cds_length": 4257,
"cds_start": 3229,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 36,
"exon_rank": 28,
"exon_rank_end": null,
"feature": "ENST00000692972.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3229G>T",
"hgvs_p": "p.Gly1077Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000510753.1",
"strand": false,
"transcript": "ENST00000692972.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1397,
"aa_ref": "G",
"aa_start": 1056,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5377,
"cdna_start": 3233,
"cds_end": null,
"cds_length": 4194,
"cds_start": 3166,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000691661.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3166G>T",
"hgvs_p": "p.Gly1056Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000510185.1",
"strand": false,
"transcript": "ENST00000691661.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1397,
"aa_ref": "G",
"aa_start": 1056,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4452,
"cdna_start": 3272,
"cds_end": null,
"cds_length": 4194,
"cds_start": 3166,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000888373.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3166G>T",
"hgvs_p": "p.Gly1056Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558432.1",
"strand": false,
"transcript": "ENST00000888373.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1393,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 7330,
"cdna_start": 3344,
"cds_end": null,
"cds_length": 4182,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000888367.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558426.1",
"strand": false,
"transcript": "ENST00000888367.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1391,
"aa_ref": "G",
"aa_start": 1050,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5040,
"cdna_start": 3213,
"cds_end": null,
"cds_length": 4176,
"cds_start": 3148,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000888371.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3148G>T",
"hgvs_p": "p.Gly1050Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558430.1",
"strand": false,
"transcript": "ENST00000888371.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1385,
"aa_ref": "G",
"aa_start": 1044,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5370,
"cdna_start": 3214,
"cds_end": null,
"cds_length": 4158,
"cds_start": 3130,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000947881.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3130G>T",
"hgvs_p": "p.Gly1044Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000617940.1",
"strand": false,
"transcript": "ENST00000947881.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1381,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5230,
"cdna_start": 3246,
"cds_end": null,
"cds_length": 4146,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000692813.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509080.1",
"strand": false,
"transcript": "ENST00000692813.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1381,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5009,
"cdna_start": 3238,
"cds_end": null,
"cds_length": 4146,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000888372.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558431.1",
"strand": false,
"transcript": "ENST00000888372.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1368,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4879,
"cdna_start": 3196,
"cds_end": null,
"cds_length": 4107,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000690824.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000510709.1",
"strand": false,
"transcript": "ENST00000690824.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1368,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5032,
"cdna_start": 3280,
"cds_end": null,
"cds_length": 4107,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 35,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000888368.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558427.1",
"strand": false,
"transcript": "ENST00000888368.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1360,
"aa_ref": "G",
"aa_start": 1019,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5345,
"cdna_start": 3201,
"cds_end": null,
"cds_length": 4083,
"cds_start": 3055,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000690315.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3055G>T",
"hgvs_p": "p.Gly1019Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509834.1",
"strand": false,
"transcript": "ENST00000690315.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1360,
"aa_ref": "G",
"aa_start": 1019,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5001,
"cdna_start": 3195,
"cds_end": null,
"cds_length": 4083,
"cds_start": 3055,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000947882.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3055G>T",
"hgvs_p": "p.Gly1019Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000617941.1",
"strand": false,
"transcript": "ENST00000947882.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1359,
"aa_ref": "G",
"aa_start": 1018,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5263,
"cdna_start": 3119,
"cds_end": null,
"cds_length": 4080,
"cds_start": 3052,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000691862.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3052G>T",
"hgvs_p": "p.Gly1018Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509291.1",
"strand": false,
"transcript": "ENST00000691862.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1359,
"aa_ref": "G",
"aa_start": 1018,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4972,
"cdna_start": 3145,
"cds_end": null,
"cds_length": 4080,
"cds_start": 3052,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000888369.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3052G>T",
"hgvs_p": "p.Gly1018Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558428.1",
"strand": false,
"transcript": "ENST00000888369.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1358,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5274,
"cdna_start": 3276,
"cds_end": null,
"cds_length": 4077,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000685664.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509121.1",
"strand": false,
"transcript": "ENST00000685664.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1319,
"aa_ref": "G",
"aa_start": 1052,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4832,
"cdna_start": 3247,
"cds_end": null,
"cds_length": 3960,
"cds_start": 3154,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 34,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000888370.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.3154G>T",
"hgvs_p": "p.Gly1052Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000558429.1",
"strand": false,
"transcript": "ENST00000888370.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1305,
"aa_ref": "G",
"aa_start": 964,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5286,
"cdna_start": 3142,
"cds_end": null,
"cds_length": 3918,
"cds_start": 2890,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 36,
"exon_rank": 28,
"exon_rank_end": null,
"feature": "ENST00000686381.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.2890G>T",
"hgvs_p": "p.Gly964Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000509555.1",
"strand": false,
"transcript": "ENST00000686381.1",
"transcript_support_level": null
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 1305,
"aa_ref": "G",
"aa_start": 964,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5333,
"cdna_start": 3189,
"cds_end": null,
"cds_length": 3918,
"cds_start": 2890,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_count": 36,
"exon_rank": 28,
"exon_rank_end": null,
"feature": "ENST00000687065.1",
"gene_hgnc_id": 17168,
"gene_symbol": "RAB3GAP2",
"hgvs_c": "c.2890G>T",
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