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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-225845227-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=225845227&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "EPHX1",
          "hgnc_id": 3401,
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "inheritance_mode": "AR,Unknown",
          "pathogenic_score": 4,
          "score": 4,
          "transcript": "NM_000120.4",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "ENSG00000242861",
          "hgnc_id": null,
          "hgvs_c": "n.43+1253C>A",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 4,
          "score": 4,
          "transcript": "ENST00000424332.1",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PP3_Moderate"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "TMEM63A",
          "hgnc_id": 29118,
          "hgvs_c": "n.2539+1611C>A",
          "hgvs_p": null,
          "inheritance_mode": "AD",
          "pathogenic_score": 4,
          "score": 4,
          "transcript": "XR_949163.4",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Moderate",
      "acmg_score": 4,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.9266,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.5,
      "chr": "1",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.8935133218765259,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1635,
          "cdna_start": 1299,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NM_001136018.4",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000272167.10",
          "protein_coding": true,
          "protein_id": "NP_001129490.1",
          "strand": true,
          "transcript": "NM_001136018.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1635,
          "cdna_start": 1299,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000272167.10",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001136018.4",
          "protein_coding": true,
          "protein_id": "ENSP00000272167.5",
          "strand": true,
          "transcript": "ENST00000272167.10",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1780,
          "cdna_start": 1444,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000366837.5",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000355802.4",
          "strand": true,
          "transcript": "ENST00000366837.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1789,
          "cdna_start": 1457,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000614058.4",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000480004.1",
          "strand": true,
          "transcript": "ENST00000614058.4",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 492,
          "aa_ref": "K",
          "aa_start": 453,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1887,
          "cdna_start": 1555,
          "cds_end": null,
          "cds_length": 1479,
          "cds_start": 1359,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000869511.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1359G>T",
          "hgvs_p": "p.Lys453Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539570.1",
          "strand": true,
          "transcript": "ENST00000869511.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 488,
          "aa_ref": "K",
          "aa_start": 449,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1733,
          "cdna_start": 1397,
          "cds_end": null,
          "cds_length": 1467,
          "cds_start": 1347,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000869476.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1347G>T",
          "hgvs_p": "p.Lys449Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539535.1",
          "strand": true,
          "transcript": "ENST00000869476.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 488,
          "aa_ref": "K",
          "aa_start": 449,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1903,
          "cdna_start": 1571,
          "cds_end": null,
          "cds_length": 1467,
          "cds_start": 1347,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000869509.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1347G>T",
          "hgvs_p": "p.Lys449Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539568.1",
          "strand": true,
          "transcript": "ENST00000869509.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 479,
          "aa_ref": "K",
          "aa_start": 440,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1702,
          "cdna_start": 1371,
          "cds_end": null,
          "cds_length": 1440,
          "cds_start": 1320,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000869484.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1320G>T",
          "hgvs_p": "p.Lys440Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539543.1",
          "strand": true,
          "transcript": "ENST00000869484.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 467,
          "aa_ref": "K",
          "aa_start": 428,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1667,
          "cdna_start": 1335,
          "cds_end": null,
          "cds_length": 1404,
          "cds_start": 1284,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000869483.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1284G>T",
          "hgvs_p": "p.Lys428Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539542.1",
          "strand": true,
          "transcript": "ENST00000869483.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 467,
          "aa_ref": "K",
          "aa_start": 428,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1811,
          "cdna_start": 1480,
          "cds_end": null,
          "cds_length": 1404,
          "cds_start": 1284,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000869517.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1284G>T",
          "hgvs_p": "p.Lys428Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539576.1",
          "strand": true,
          "transcript": "ENST00000869517.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": "K",
          "aa_start": 426,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1687,
          "cdna_start": 1351,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": 1278,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000869470.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1278G>T",
          "hgvs_p": "p.Lys426Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539529.1",
          "strand": true,
          "transcript": "ENST00000869470.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": "K",
          "aa_start": 426,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1799,
          "cdna_start": 1468,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": 1278,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000869516.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1278G>T",
          "hgvs_p": "p.Lys426Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539575.1",
          "strand": true,
          "transcript": "ENST00000869516.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 465,
          "aa_ref": "K",
          "aa_start": 426,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1796,
          "cdna_start": 1464,
          "cds_end": null,
          "cds_length": 1398,
          "cds_start": 1278,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000869519.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1278G>T",
          "hgvs_p": "p.Lys426Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539578.1",
          "strand": true,
          "transcript": "ENST00000869519.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1780,
          "cdna_start": 1444,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NM_000120.4",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_000111.1",
          "strand": true,
          "transcript": "NM_000120.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2081,
          "cdna_start": 1745,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NM_001291163.2",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001278092.1",
          "strand": true,
          "transcript": "NM_001291163.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1839,
          "cdna_start": 1503,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "NM_001378426.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001365355.1",
          "strand": true,
          "transcript": "NM_001378426.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1682,
          "cdna_start": 1346,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "NM_001378427.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
          "hgvs_p": "p.Lys416Asn",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001365356.1",
          "strand": true,
          "transcript": "NM_001378427.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "N",
          "aa_end": null,
          "aa_length": 455,
          "aa_ref": "K",
          "aa_start": 416,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1722,
          "cdna_start": 1386,
          "cds_end": null,
          "cds_length": 1368,
          "cds_start": 1248,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000869469.1",
          "gene_hgnc_id": 3401,
          "gene_symbol": "EPHX1",
          "hgvs_c": "c.1248G>T",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.