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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-23019653-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=23019653&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 23019653,
"ref": "C",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_001410762.1",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "NM_001009999.3",
"protein_id": "NP_001009999.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 876,
"cds_start": 57,
"cds_end": null,
"cds_length": 2631,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000400181.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001009999.3"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000400181.9",
"protein_id": "ENSP00000383042.5",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 876,
"cds_start": 57,
"cds_end": null,
"cds_length": 2631,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001009999.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000400181.9"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000356634.7",
"protein_id": "ENSP00000349049.3",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 852,
"cds_start": 57,
"cds_end": null,
"cds_length": 2559,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000356634.7"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000874661.1",
"protein_id": "ENSP00000544720.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 905,
"cds_start": 57,
"cds_end": null,
"cds_length": 2718,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874661.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000874662.1",
"protein_id": "ENSP00000544721.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 885,
"cds_start": 57,
"cds_end": null,
"cds_length": 2658,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874662.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "NM_001410762.1",
"protein_id": "NP_001397691.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 878,
"cds_start": 57,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001410762.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000685102.1",
"protein_id": "ENSP00000509257.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 878,
"cds_start": 57,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000685102.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000874660.1",
"protein_id": "ENSP00000544719.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 872,
"cds_start": 57,
"cds_end": null,
"cds_length": 2619,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874660.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000919149.1",
"protein_id": "ENSP00000589208.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 871,
"cds_start": 57,
"cds_end": null,
"cds_length": 2616,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919149.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000919152.1",
"protein_id": "ENSP00000589211.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 870,
"cds_start": 57,
"cds_end": null,
"cds_length": 2613,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919152.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000954769.1",
"protein_id": "ENSP00000624828.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 862,
"cds_start": 57,
"cds_end": null,
"cds_length": 2589,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954769.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "NM_001363654.2",
"protein_id": "NP_001350583.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 858,
"cds_start": 57,
"cds_end": null,
"cds_length": 2577,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001363654.2"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000465864.2",
"protein_id": "ENSP00000473297.2",
"transcript_support_level": 5,
"aa_start": 19,
"aa_end": null,
"aa_length": 858,
"cds_start": 57,
"cds_end": null,
"cds_length": 2577,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000465864.2"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000954764.1",
"protein_id": "ENSP00000624823.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 856,
"cds_start": 57,
"cds_end": null,
"cds_length": 2571,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954764.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "NM_015013.4",
"protein_id": "NP_055828.2",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 852,
"cds_start": 57,
"cds_end": null,
"cds_length": 2559,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015013.4"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000874664.1",
"protein_id": "ENSP00000544723.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 851,
"cds_start": 57,
"cds_end": null,
"cds_length": 2556,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874664.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000954767.1",
"protein_id": "ENSP00000624826.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 850,
"cds_start": 57,
"cds_end": null,
"cds_length": 2553,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000954767.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000919150.1",
"protein_id": "ENSP00000589209.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 842,
"cds_start": 57,
"cds_end": null,
"cds_length": 2529,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919150.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000691404.1",
"protein_id": "ENSP00000509252.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 840,
"cds_start": 57,
"cds_end": null,
"cds_length": 2523,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000691404.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000874663.1",
"protein_id": "ENSP00000544722.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 823,
"cds_start": 57,
"cds_end": null,
"cds_length": 2472,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874663.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000919158.1",
"protein_id": "ENSP00000589217.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 822,
"cds_start": 57,
"cds_end": null,
"cds_length": 2469,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000919158.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KDM1A",
"gene_hgnc_id": 29079,
"hgvs_c": "c.57C>A",
"hgvs_p": "p.Thr19Thr",
"transcript": "ENST00000692975.1",
"protein_id": "ENSP00000509892.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 820,
"cds_start": 57,
"cds_end": null,
"cds_length": 2463,
"cdna_start": null,
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