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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-23338018-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=23338018&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 23338018,
"ref": "T",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000374616.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "NM_005826.5",
"protein_id": "NP_005817.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": -4,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7751,
"mane_select": "ENST00000302271.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "ENST00000302271.11",
"protein_id": "ENSP00000304405.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": -4,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7751,
"mane_select": "NM_005826.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "ENST00000374616.7",
"protein_id": "ENSP00000363745.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 636,
"cds_start": -4,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2691,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.-27-157A>C",
"hgvs_p": null,
"transcript": "ENST00000478691.5",
"protein_id": "ENSP00000474437.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 535,
"cds_start": -4,
"cds_end": null,
"cds_length": 1608,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7646,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "NM_001102398.3",
"protein_id": "NP_001095868.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 636,
"cds_start": -4,
"cds_end": null,
"cds_length": 1911,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7760,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "NM_001438564.1",
"protein_id": "NP_001425493.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": -4,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "ENST00000374612.5",
"protein_id": "ENSP00000363741.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 633,
"cds_start": -4,
"cds_end": null,
"cds_length": 1902,
"cdna_start": null,
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"cdna_length": 2694,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "NM_001297620.2",
"protein_id": "NP_001284549.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 595,
"cds_start": -4,
"cds_end": null,
"cds_length": 1788,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7637,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "ENST00000463552.6",
"protein_id": "ENSP00000502509.2",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 595,
"cds_start": -4,
"cds_end": null,
"cds_length": 1788,
"cdna_start": null,
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"cdna_length": 7683,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "NM_001437727.1",
"protein_id": "NP_001424656.1",
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"aa_start": null,
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"aa_length": 574,
"cds_start": -4,
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 3,
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"gene_symbol": "HNRNPR",
"gene_hgnc_id": 5047,
"hgvs_c": "c.277-157A>C",
"hgvs_p": null,
"transcript": "ENST00000470941.6",
"protein_id": "ENSP00000502234.2",
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},
{
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],
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"gene_symbol": "HNRNPR",
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},
{
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],
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"gene_symbol": "HNRNPR",
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"hgvs_c": "c.-27-157A>C",
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},
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],
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"gene_symbol": "HNRNPR",
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"transcript": "ENST00000476451.3",
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],
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},
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],
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"gene_symbol": "HNRNPR",
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"hgvs_c": "c.-27-157A>C",
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"gene_symbol": "HNRNPR",
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},
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],
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"gene_symbol": "HNRNPR",
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"hgvs_c": "c.-27-157A>C",
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"transcript": "NM_001297621.2",
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],
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"gene_symbol": "HNRNPR",
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"transcript": "XM_047424758.1",
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},
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],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "HNRNPR",
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"hgvs_c": "c.277-157A>C",
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