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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-23433251-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=23433251&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 23433251,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_017707.4",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2149G>A",
"hgvs_p": "p.Ala717Thr",
"transcript": "NM_017707.4",
"protein_id": "NP_060177.2",
"transcript_support_level": null,
"aa_start": 717,
"aa_end": null,
"aa_length": 903,
"cds_start": 2149,
"cds_end": null,
"cds_length": 2712,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000336689.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_017707.4"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2149G>A",
"hgvs_p": "p.Ala717Thr",
"transcript": "ENST00000336689.8",
"protein_id": "ENSP00000338769.3",
"transcript_support_level": 1,
"aa_start": 717,
"aa_end": null,
"aa_length": 903,
"cds_start": 2149,
"cds_end": null,
"cds_length": 2712,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_017707.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000336689.8"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2218G>A",
"hgvs_p": "p.Ala740Thr",
"transcript": "ENST00000948796.1",
"protein_id": "ENSP00000618855.1",
"transcript_support_level": null,
"aa_start": 740,
"aa_end": null,
"aa_length": 926,
"cds_start": 2218,
"cds_end": null,
"cds_length": 2781,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948796.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2212G>A",
"hgvs_p": "p.Ala738Thr",
"transcript": "ENST00000857995.1",
"protein_id": "ENSP00000528054.1",
"transcript_support_level": null,
"aa_start": 738,
"aa_end": null,
"aa_length": 924,
"cds_start": 2212,
"cds_end": null,
"cds_length": 2775,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857995.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2137G>A",
"hgvs_p": "p.Ala713Thr",
"transcript": "ENST00000857997.1",
"protein_id": "ENSP00000528056.1",
"transcript_support_level": null,
"aa_start": 713,
"aa_end": null,
"aa_length": 899,
"cds_start": 2137,
"cds_end": null,
"cds_length": 2700,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857997.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2122G>A",
"hgvs_p": "p.Ala708Thr",
"transcript": "NM_001143778.2",
"protein_id": "NP_001137250.1",
"transcript_support_level": null,
"aa_start": 708,
"aa_end": null,
"aa_length": 894,
"cds_start": 2122,
"cds_end": null,
"cds_length": 2685,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001143778.2"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2122G>A",
"hgvs_p": "p.Ala708Thr",
"transcript": "ENST00000437606.6",
"protein_id": "ENSP00000408826.2",
"transcript_support_level": 2,
"aa_start": 708,
"aa_end": null,
"aa_length": 894,
"cds_start": 2122,
"cds_end": null,
"cds_length": 2685,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000437606.6"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2104G>A",
"hgvs_p": "p.Ala702Thr",
"transcript": "ENST00000948797.1",
"protein_id": "ENSP00000618856.1",
"transcript_support_level": null,
"aa_start": 702,
"aa_end": null,
"aa_length": 888,
"cds_start": 2104,
"cds_end": null,
"cds_length": 2667,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948797.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2098G>A",
"hgvs_p": "p.Ala700Thr",
"transcript": "ENST00000857996.1",
"protein_id": "ENSP00000528055.1",
"transcript_support_level": null,
"aa_start": 700,
"aa_end": null,
"aa_length": 886,
"cds_start": 2098,
"cds_end": null,
"cds_length": 2661,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857996.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2098G>A",
"hgvs_p": "p.Ala700Thr",
"transcript": "ENST00000931115.1",
"protein_id": "ENSP00000601174.1",
"transcript_support_level": null,
"aa_start": 700,
"aa_end": null,
"aa_length": 859,
"cds_start": 2098,
"cds_end": null,
"cds_length": 2580,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000931115.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.1756G>A",
"hgvs_p": "p.Ala586Thr",
"transcript": "ENST00000711427.1",
"protein_id": "ENSP00000518744.1",
"transcript_support_level": null,
"aa_start": 586,
"aa_end": null,
"aa_length": 772,
"cds_start": 1756,
"cds_end": null,
"cds_length": 2319,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000711427.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.904G>A",
"hgvs_p": "p.Ala302Thr",
"transcript": "ENST00000465372.6",
"protein_id": "ENSP00000435394.2",
"transcript_support_level": 5,
"aa_start": 302,
"aa_end": null,
"aa_length": 461,
"cds_start": 904,
"cds_end": null,
"cds_length": 1386,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000465372.6"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.661G>A",
"hgvs_p": "p.Ala221Thr",
"transcript": "ENST00000495646.5",
"protein_id": "ENSP00000436150.1",
"transcript_support_level": 2,
"aa_start": 221,
"aa_end": null,
"aa_length": 407,
"cds_start": 661,
"cds_end": null,
"cds_length": 1224,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000495646.5"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2218G>A",
"hgvs_p": "p.Ala740Thr",
"transcript": "XM_011541755.3",
"protein_id": "XP_011540057.1",
"transcript_support_level": null,
"aa_start": 740,
"aa_end": null,
"aa_length": 926,
"cds_start": 2218,
"cds_end": null,
"cds_length": 2781,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011541755.3"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2212G>A",
"hgvs_p": "p.Ala738Thr",
"transcript": "XM_017001685.3",
"protein_id": "XP_016857174.1",
"transcript_support_level": null,
"aa_start": 738,
"aa_end": null,
"aa_length": 924,
"cds_start": 2212,
"cds_end": null,
"cds_length": 2775,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017001685.3"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2155G>A",
"hgvs_p": "p.Ala719Thr",
"transcript": "XM_017001686.3",
"protein_id": "XP_016857175.1",
"transcript_support_level": null,
"aa_start": 719,
"aa_end": null,
"aa_length": 905,
"cds_start": 2155,
"cds_end": null,
"cds_length": 2718,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017001686.3"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.2089G>A",
"hgvs_p": "p.Ala697Thr",
"transcript": "XM_017001687.1",
"protein_id": "XP_016857176.1",
"transcript_support_level": null,
"aa_start": 697,
"aa_end": null,
"aa_length": 883,
"cds_start": 2089,
"cds_end": null,
"cds_length": 2652,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017001687.1"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.1819G>A",
"hgvs_p": "p.Ala607Thr",
"transcript": "XM_017001688.3",
"protein_id": "XP_016857177.1",
"transcript_support_level": null,
"aa_start": 607,
"aa_end": null,
"aa_length": 793,
"cds_start": 1819,
"cds_end": null,
"cds_length": 2382,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017001688.3"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.1762G>A",
"hgvs_p": "p.Ala588Thr",
"transcript": "XM_017001689.2",
"protein_id": "XP_016857178.1",
"transcript_support_level": null,
"aa_start": 588,
"aa_end": null,
"aa_length": 774,
"cds_start": 1762,
"cds_end": null,
"cds_length": 2325,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017001689.2"
},
{
"aa_ref": "A",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.1756G>A",
"hgvs_p": "p.Ala586Thr",
"transcript": "XM_047424481.1",
"protein_id": "XP_047280437.1",
"transcript_support_level": null,
"aa_start": 586,
"aa_end": null,
"aa_length": 772,
"cds_start": 1756,
"cds_end": null,
"cds_length": 2319,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047424481.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "c.1951+1003G>A",
"hgvs_p": null,
"transcript": "ENST00000948795.1",
"protein_id": "ENSP00000618854.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 779,
"cds_start": null,
"cds_end": null,
"cds_length": 2340,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948795.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"hgvs_c": "n.*486G>A",
"hgvs_p": null,
"transcript": "ENST00000484418.1",
"protein_id": "ENSP00000434897.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
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{
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"protein_coding": false,
"strand": false,
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],
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{
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"consequences": [
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},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
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],
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"gene_symbol": "ASAP3",
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},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
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"exon_count": 8,
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"gene_symbol": "ASAP3",
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},
{
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"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"gene_symbol": "ASAP3",
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"feature": "ENST00000492982.6"
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{
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"protein_coding": false,
"strand": false,
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],
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"gene_symbol": "ASAP3",
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"biotype": "nonsense_mediated_decay",
"feature": "ENST00000711425.1"
},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
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"exon_count": 25,
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"gene_symbol": "ASAP3",
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"hgvs_c": "n.*1484G>A",
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"transcript": "ENST00000711426.1",
"protein_id": "ENSP00000518743.1",
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"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"biotype": "nonsense_mediated_decay",
"feature": "ENST00000711426.1"
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],
"gene_symbol": "ASAP3",
"gene_hgnc_id": 14987,
"dbsnp": "rs1329364609",
"frequency_reference_population": 0.0000013731435,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000137314,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.0760708749294281,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.039,
"revel_prediction": "Benign",
"alphamissense_score": 0.0675,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.55,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.084,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_017707.4",
"gene_symbol": "ASAP3",
"hgnc_id": 14987,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2149G>A",
"hgvs_p": "p.Ala717Thr"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}