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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-236762563-GGT-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=236762563&ref=GGT&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PVS1_Moderate",
            "PM2"
          ],
          "effects": [
            "frameshift_variant"
          ],
          "gene_symbol": "ACTN2",
          "hgnc_id": 164,
          "hgvs_c": "c.2630delG",
          "hgvs_p": "p.Gly877fs",
          "inheritance_mode": "AD,Unknown",
          "pathogenic_score": 4,
          "score": 4,
          "transcript": "NM_001103.4",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PVS1_Moderate,PM2",
      "acmg_score": 4,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "TG",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "1",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 894,
          "aa_ref": "G",
          "aa_start": 877,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4872,
          "cdna_start": 2805,
          "cds_end": null,
          "cds_length": 2685,
          "cds_start": 2630,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "NM_001103.4",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2630delG",
          "hgvs_p": "p.Gly877fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000366578.6",
          "protein_coding": true,
          "protein_id": "NP_001094.1",
          "strand": true,
          "transcript": "NM_001103.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 894,
          "aa_ref": "G",
          "aa_start": 877,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 4872,
          "cdna_start": 2805,
          "cds_end": null,
          "cds_length": 2685,
          "cds_start": 2630,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000366578.6",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2630delG",
          "hgvs_p": "p.Gly877fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001103.4",
          "protein_coding": true,
          "protein_id": "ENSP00000355537.4",
          "strand": true,
          "transcript": "ENST00000366578.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 894,
          "aa_ref": "G",
          "aa_start": 877,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4872,
          "cdna_start": 2805,
          "cds_end": null,
          "cds_length": 2685,
          "cds_start": 2630,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000542672.7",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2630delG",
          "hgvs_p": "p.Gly877fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000443495.1",
          "strand": true,
          "transcript": "ENST00000542672.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 931,
          "aa_ref": "G",
          "aa_start": 914,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3043,
          "cdna_start": 2916,
          "cds_end": null,
          "cds_length": 2796,
          "cds_start": 2741,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 22,
          "exon_rank": 22,
          "exon_rank_end": null,
          "feature": "ENST00000879537.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2741delG",
          "hgvs_p": "p.Gly914fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000549596.1",
          "strand": true,
          "transcript": "ENST00000879537.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 931,
          "aa_ref": "G",
          "aa_start": 914,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3023,
          "cdna_start": 2915,
          "cds_end": null,
          "cds_length": 2796,
          "cds_start": 2741,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 22,
          "exon_rank": 22,
          "exon_rank_end": null,
          "feature": "ENST00000967370.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2741delG",
          "hgvs_p": "p.Gly914fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637429.1",
          "strand": true,
          "transcript": "ENST00000967370.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 928,
          "aa_ref": "G",
          "aa_start": 911,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3369,
          "cdna_start": 2907,
          "cds_end": null,
          "cds_length": 2787,
          "cds_start": 2732,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967362.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2732delG",
          "hgvs_p": "p.Gly911fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637421.1",
          "strand": true,
          "transcript": "ENST00000967362.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 924,
          "aa_ref": "G",
          "aa_start": 907,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3369,
          "cdna_start": 2895,
          "cds_end": null,
          "cds_length": 2775,
          "cds_start": 2720,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 22,
          "exon_rank": 22,
          "exon_rank_end": null,
          "feature": "ENST00000879533.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2720delG",
          "hgvs_p": "p.Gly907fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000549592.1",
          "strand": true,
          "transcript": "ENST00000879533.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 909,
          "aa_ref": "G",
          "aa_start": 892,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2977,
          "cdna_start": 2853,
          "cds_end": null,
          "cds_length": 2730,
          "cds_start": 2675,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 22,
          "exon_rank": 22,
          "exon_rank_end": null,
          "feature": "ENST00000967365.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2675delG",
          "hgvs_p": "p.Gly892fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637424.1",
          "strand": true,
          "transcript": "ENST00000967365.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 907,
          "aa_ref": "G",
          "aa_start": 890,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3473,
          "cdna_start": 2844,
          "cds_end": null,
          "cds_length": 2724,
          "cds_start": 2669,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000879532.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2669delG",
          "hgvs_p": "p.Gly890fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000549591.1",
          "strand": true,
          "transcript": "ENST00000879532.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 905,
          "aa_ref": "G",
          "aa_start": 888,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3299,
          "cdna_start": 2837,
          "cds_end": null,
          "cds_length": 2718,
          "cds_start": 2663,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967363.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2663delG",
          "hgvs_p": "p.Gly888fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637422.1",
          "strand": true,
          "transcript": "ENST00000967363.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 898,
          "aa_ref": "G",
          "aa_start": 881,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4718,
          "cdna_start": 2746,
          "cds_end": null,
          "cds_length": 2697,
          "cds_start": 2642,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967352.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2642delG",
          "hgvs_p": "p.Gly881fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637411.1",
          "strand": true,
          "transcript": "ENST00000967352.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "G",
          "aa_start": 878,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3280,
          "cdna_start": 2811,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2633,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000879534.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2633delG",
          "hgvs_p": "p.Gly878fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000549593.1",
          "strand": true,
          "transcript": "ENST00000879534.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 894,
          "aa_ref": "G",
          "aa_start": 877,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4872,
          "cdna_start": 2805,
          "cds_end": null,
          "cds_length": 2685,
          "cds_start": 2630,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "NM_001278343.2",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2630delG",
          "hgvs_p": "p.Gly877fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001265272.1",
          "strand": true,
          "transcript": "NM_001278343.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 893,
          "aa_ref": "G",
          "aa_start": 876,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2929,
          "cdna_start": 2802,
          "cds_end": null,
          "cds_length": 2682,
          "cds_start": 2627,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000879538.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2627delG",
          "hgvs_p": "p.Gly876fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000549597.1",
          "strand": true,
          "transcript": "ENST00000879538.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 892,
          "aa_ref": "G",
          "aa_start": 875,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4867,
          "cdna_start": 2800,
          "cds_end": null,
          "cds_length": 2679,
          "cds_start": 2624,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967348.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2624delG",
          "hgvs_p": "p.Gly875fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637407.1",
          "strand": true,
          "transcript": "ENST00000967348.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 892,
          "aa_ref": "G",
          "aa_start": 875,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3427,
          "cdna_start": 2802,
          "cds_end": null,
          "cds_length": 2679,
          "cds_start": 2624,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967355.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2624delG",
          "hgvs_p": "p.Gly875fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637414.1",
          "strand": true,
          "transcript": "ENST00000967355.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 889,
          "aa_ref": "G",
          "aa_start": 872,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4171,
          "cdna_start": 2790,
          "cds_end": null,
          "cds_length": 2670,
          "cds_start": 2615,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967354.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2615delG",
          "hgvs_p": "p.Gly872fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637413.1",
          "strand": true,
          "transcript": "ENST00000967354.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 888,
          "aa_ref": "G",
          "aa_start": 871,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3412,
          "cdna_start": 2787,
          "cds_end": null,
          "cds_length": 2667,
          "cds_start": 2612,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000967356.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2612delG",
          "hgvs_p": "p.Gly871fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000637415.1",
          "strand": true,
          "transcript": "ENST00000967356.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 887,
          "aa_ref": "G",
          "aa_start": 870,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3253,
          "cdna_start": 2784,
          "cds_end": null,
          "cds_length": 2664,
          "cds_start": 2609,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_count": 21,
          "exon_rank": 21,
          "exon_rank_end": null,
          "feature": "ENST00000879535.1",
          "gene_hgnc_id": 164,
          "gene_symbol": "ACTN2",
          "hgvs_c": "c.2609delG",
          "hgvs_p": "p.Gly870fs",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000549594.1",
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.