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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-241508654-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=241508654&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 241508654,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_000143.4",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met",
"transcript": "NM_000143.4",
"protein_id": "NP_000134.2",
"transcript_support_level": null,
"aa_start": 229,
"aa_end": null,
"aa_length": 510,
"cds_start": 687,
"cds_end": null,
"cds_length": 1533,
"cdna_start": 720,
"cdna_end": null,
"cdna_length": 1791,
"mane_select": "ENST00000366560.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000143.4"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met",
"transcript": "ENST00000366560.4",
"protein_id": "ENSP00000355518.4",
"transcript_support_level": 1,
"aa_start": 229,
"aa_end": null,
"aa_length": 510,
"cds_start": 687,
"cds_end": null,
"cds_length": 1533,
"cdna_start": 720,
"cdna_end": null,
"cdna_length": 1791,
"mane_select": "NM_000143.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000366560.4"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.684C>G",
"hgvs_p": "p.Ile228Met",
"transcript": "ENST00000958409.1",
"protein_id": "ENSP00000628468.1",
"transcript_support_level": null,
"aa_start": 228,
"aa_end": null,
"aa_length": 509,
"cds_start": 684,
"cds_end": null,
"cds_length": 1530,
"cdna_start": 717,
"cdna_end": null,
"cdna_length": 1604,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958409.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.639C>G",
"hgvs_p": "p.Ile213Met",
"transcript": "ENST00000932939.1",
"protein_id": "ENSP00000602998.1",
"transcript_support_level": null,
"aa_start": 213,
"aa_end": null,
"aa_length": 494,
"cds_start": 639,
"cds_end": null,
"cds_length": 1485,
"cdna_start": 654,
"cdna_end": null,
"cdna_length": 1544,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000932939.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met",
"transcript": "ENST00000683521.1",
"protein_id": "ENSP00000506864.1",
"transcript_support_level": null,
"aa_start": 229,
"aa_end": null,
"aa_length": 480,
"cds_start": 687,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 764,
"cdna_end": null,
"cdna_length": 3166,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000683521.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.576C>G",
"hgvs_p": "p.Ile192Met",
"transcript": "ENST00000865387.1",
"protein_id": "ENSP00000535446.1",
"transcript_support_level": null,
"aa_start": 192,
"aa_end": null,
"aa_length": 473,
"cds_start": 576,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 609,
"cdna_end": null,
"cdna_length": 1495,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865387.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.552C>G",
"hgvs_p": "p.Ile184Met",
"transcript": "ENST00000865385.1",
"protein_id": "ENSP00000535444.1",
"transcript_support_level": null,
"aa_start": 184,
"aa_end": null,
"aa_length": 465,
"cds_start": 552,
"cds_end": null,
"cds_length": 1398,
"cdna_start": 591,
"cdna_end": null,
"cdna_length": 1485,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865385.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met",
"transcript": "ENST00000958406.1",
"protein_id": "ENSP00000628465.1",
"transcript_support_level": null,
"aa_start": 229,
"aa_end": null,
"aa_length": 460,
"cds_start": 687,
"cds_end": null,
"cds_length": 1383,
"cdna_start": 719,
"cdna_end": null,
"cdna_length": 1633,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958406.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met",
"transcript": "ENST00000865388.1",
"protein_id": "ENSP00000535447.1",
"transcript_support_level": null,
"aa_start": 229,
"aa_end": null,
"aa_length": 452,
"cds_start": 687,
"cds_end": null,
"cds_length": 1359,
"cdna_start": 707,
"cdna_end": null,
"cdna_length": 1420,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865388.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.510C>G",
"hgvs_p": "p.Ile170Met",
"transcript": "ENST00000865386.1",
"protein_id": "ENSP00000535445.1",
"transcript_support_level": null,
"aa_start": 170,
"aa_end": null,
"aa_length": 451,
"cds_start": 510,
"cds_end": null,
"cds_length": 1356,
"cdna_start": 543,
"cdna_end": null,
"cdna_length": 1429,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865386.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met",
"transcript": "ENST00000865390.1",
"protein_id": "ENSP00000535449.1",
"transcript_support_level": null,
"aa_start": 229,
"aa_end": null,
"aa_length": 442,
"cds_start": 687,
"cds_end": null,
"cds_length": 1329,
"cdna_start": 687,
"cdna_end": null,
"cdna_length": 1362,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865390.1"
},
{
"aa_ref": "I",
"aa_alt": "M",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.399C>G",
"hgvs_p": "p.Ile133Met",
"transcript": "ENST00000958407.1",
"protein_id": "ENSP00000628466.1",
"transcript_support_level": null,
"aa_start": 133,
"aa_end": null,
"aa_length": 414,
"cds_start": 399,
"cds_end": null,
"cds_length": 1245,
"cdna_start": 454,
"cdna_end": null,
"cdna_length": 1348,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958407.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.556-2486C>G",
"hgvs_p": null,
"transcript": "ENST00000865389.1",
"protein_id": "ENSP00000535448.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 449,
"cds_start": null,
"cds_end": null,
"cds_length": 1350,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1391,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865389.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.379-2486C>G",
"hgvs_p": null,
"transcript": "ENST00000865384.1",
"protein_id": "ENSP00000535443.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 390,
"cds_start": null,
"cds_end": null,
"cds_length": 1173,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1394,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000865384.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "c.133-2486C>G",
"hgvs_p": null,
"transcript": "ENST00000958408.1",
"protein_id": "ENSP00000628467.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 308,
"cds_start": null,
"cds_end": null,
"cds_length": 927,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1023,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000958408.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.1190C>G",
"hgvs_p": null,
"transcript": "ENST00000493477.2",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2353,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000493477.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.*530C>G",
"hgvs_p": null,
"transcript": "ENST00000682162.1",
"protein_id": "ENSP00000508203.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1802,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000682162.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.764C>G",
"hgvs_p": null,
"transcript": "ENST00000682567.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5122,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000682567.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.1902C>G",
"hgvs_p": null,
"transcript": "ENST00000684161.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2995,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000684161.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.*83C>G",
"hgvs_p": null,
"transcript": "ENST00000684483.1",
"protein_id": "ENSP00000507894.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1818,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000684483.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.*530C>G",
"hgvs_p": null,
"transcript": "ENST00000682162.1",
"protein_id": "ENSP00000508203.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1802,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000682162.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"hgvs_c": "n.*83C>G",
"hgvs_p": null,
"transcript": "ENST00000684483.1",
"protein_id": "ENSP00000507894.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1818,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000684483.1"
}
],
"gene_symbol": "FH",
"gene_hgnc_id": 3700,
"dbsnp": "rs755587163",
"frequency_reference_population": 0.000010262627,
"hom_count_reference_population": 0,
"allele_count_reference_population": 15,
"gnomad_exomes_af": 0.0000102626,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 15,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9245563745498657,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.849,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.3979,
"alphamissense_prediction": "Uncertain_significance",
"bayesdelnoaf_score": 0.3,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 1.015,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 5,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM1,PP2,PP3_Moderate",
"acmg_by_gene": [
{
"score": 5,
"benign_score": 0,
"pathogenic_score": 5,
"criteria": [
"PM1",
"PP2",
"PP3_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_000143.4",
"gene_symbol": "FH",
"hgnc_id": 3700,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.687C>G",
"hgvs_p": "p.Ile229Met"
}
],
"clinvar_disease": "Hereditary cancer-predisposing syndrome,not provided",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "US:2",
"phenotype_combined": "Hereditary cancer-predisposing syndrome|not provided",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}