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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-24651410-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=24651410&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 24651410,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant,splice_region_variant",
      "transcript": "NM_001366595.1",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "NM_005839.4",
          "protein_id": "NP_005830.2",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 904,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2715,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000323848.14",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_005839.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000323848.14",
          "protein_id": "ENSP00000326261.8",
          "transcript_support_level": 1,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 904,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2715,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_005839.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000323848.14"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.406C>T",
          "hgvs_p": "p.Arg136Cys",
          "transcript": "ENST00000596378.1",
          "protein_id": "ENSP00000471084.1",
          "transcript_support_level": 1,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 680,
          "cds_start": 406,
          "cds_end": null,
          "cds_length": 2044,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000596378.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000928582.1",
          "protein_id": "ENSP00000598641.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 936,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2811,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928582.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.568C>T",
          "hgvs_p": "p.Arg190Cys",
          "transcript": "ENST00000874375.1",
          "protein_id": "ENSP00000544434.1",
          "transcript_support_level": null,
          "aa_start": 190,
          "aa_end": null,
          "aa_length": 933,
          "cds_start": 568,
          "cds_end": null,
          "cds_length": 2802,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874375.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000928572.1",
          "protein_id": "ENSP00000598631.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 923,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2772,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928572.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000874370.1",
          "protein_id": "ENSP00000544429.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 922,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2769,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874370.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000928571.1",
          "protein_id": "ENSP00000598630.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 921,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2766,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928571.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000928575.1",
          "protein_id": "ENSP00000598634.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 920,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2763,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928575.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000874376.1",
          "protein_id": "ENSP00000544435.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 919,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2760,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874376.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "NM_001366595.1",
          "protein_id": "NP_001353524.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366595.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000705662.1",
          "protein_id": "ENSP00000516157.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000705662.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "NM_001366569.1",
          "protein_id": "NP_001353498.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 917,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2754,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001366569.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000705663.1",
          "protein_id": "ENSP00000516158.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 917,
          "cds_start": 523,
          "cds_end": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000705663.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000928565.1",
          "protein_id": "ENSP00000598624.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 917,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2754,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928565.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "NM_001303448.2",
          "protein_id": "NP_001290377.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 916,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2751,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001303448.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000874372.1",
          "protein_id": "ENSP00000544431.1",
          "transcript_support_level": null,
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          "cds_start": 523,
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          "cds_length": 2751,
          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
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          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "NM_001366575.1",
          "protein_id": "NP_001353504.1",
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          "cds_start": 523,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001366575.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SRRM1",
          "gene_hgnc_id": 16638,
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys",
          "transcript": "ENST00000705682.1",
          "protein_id": "ENSP00000516160.1",
          "transcript_support_level": null,
          "aa_start": 175,
          "aa_end": null,
          "aa_length": 915,
          "cds_start": 523,
          "cds_end": null,
          "cds_length": 2748,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000705682.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "C",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
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      "gene_symbol": "SRRM1",
      "gene_hgnc_id": 16638,
      "dbsnp": "rs200425080",
      "frequency_reference_population": 0.00006819565,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 110,
      "gnomad_exomes_af": 0.0000677693,
      "gnomad_genomes_af": 0.0000722885,
      "gnomad_exomes_ac": 99,
      "gnomad_genomes_ac": 11,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.06385684013366699,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.7879999876022339,
      "splice_prediction_selected": "Pathogenic",
      "splice_source_selected": "dbscSNV1_RF",
      "revel_score": 0.236,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.8503,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.17,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 3.659,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": 0.982424995376291,
      "dbscsnv_ada_prediction": "Pathogenic",
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -3,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PP3,BS2",
      "acmg_by_gene": [
        {
          "score": -3,
          "benign_score": 4,
          "pathogenic_score": 1,
          "criteria": [
            "PP3",
            "BS2"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_001366595.1",
          "gene_symbol": "SRRM1",
          "hgnc_id": 16638,
          "effects": [
            "missense_variant",
            "splice_region_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.523C>T",
          "hgvs_p": "p.Arg175Cys"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}