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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-2562891-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=2562891&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 2562891,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_003820.4",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "NM_003820.4",
"protein_id": "NP_003811.2",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 1015,
"cdna_end": null,
"cdna_length": 1702,
"mane_select": "ENST00000355716.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003820.4"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000355716.5",
"protein_id": "ENSP00000347948.4",
"transcript_support_level": 1,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 1015,
"cdna_end": null,
"cdna_length": 1702,
"mane_select": "NM_003820.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000355716.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "n.958G>T",
"hgvs_p": null,
"transcript": "ENST00000475523.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1645,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000475523.5"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.985G>T",
"hgvs_p": "p.Val329Phe",
"transcript": "ENST00000860787.1",
"protein_id": "ENSP00000530846.1",
"transcript_support_level": null,
"aa_start": 329,
"aa_end": null,
"aa_length": 371,
"cds_start": 985,
"cds_end": null,
"cds_length": 1116,
"cdna_start": 1279,
"cdna_end": null,
"cdna_length": 1963,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860787.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.940G>T",
"hgvs_p": "p.Val314Phe",
"transcript": "ENST00000860789.1",
"protein_id": "ENSP00000530848.1",
"transcript_support_level": null,
"aa_start": 314,
"aa_end": null,
"aa_length": 356,
"cds_start": 940,
"cds_end": null,
"cds_length": 1071,
"cdna_start": 1206,
"cdna_end": null,
"cdna_length": 1811,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860789.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.814G>T",
"hgvs_p": "p.Val272Phe",
"transcript": "ENST00000860790.1",
"protein_id": "ENSP00000530849.1",
"transcript_support_level": null,
"aa_start": 272,
"aa_end": null,
"aa_length": 314,
"cds_start": 814,
"cds_end": null,
"cds_length": 945,
"cdna_start": 1084,
"cdna_end": null,
"cdna_length": 1683,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860790.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.742G>T",
"hgvs_p": "p.Val248Phe",
"transcript": "ENST00000860791.1",
"protein_id": "ENSP00000530850.1",
"transcript_support_level": null,
"aa_start": 248,
"aa_end": null,
"aa_length": 290,
"cds_start": 742,
"cds_end": null,
"cds_length": 873,
"cdna_start": 867,
"cdna_end": null,
"cdna_length": 1474,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860791.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000860781.1",
"protein_id": "ENSP00000530840.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 929,
"cdna_end": null,
"cdna_length": 1875,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860781.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000860782.1",
"protein_id": "ENSP00000530841.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 870,
"cdna_end": null,
"cdna_length": 1557,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860782.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000860783.1",
"protein_id": "ENSP00000530842.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 945,
"cdna_end": null,
"cdna_length": 1632,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860783.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000860784.1",
"protein_id": "ENSP00000530843.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 860,
"cdna_end": null,
"cdna_length": 1544,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860784.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000860786.1",
"protein_id": "ENSP00000530845.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 1239,
"cdna_end": null,
"cdna_length": 1930,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860786.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000972443.1",
"protein_id": "ENSP00000642502.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 849,
"cdna_end": null,
"cdna_length": 1533,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000972443.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.715G>T",
"hgvs_p": "p.Val239Phe",
"transcript": "ENST00000860788.1",
"protein_id": "ENSP00000530847.1",
"transcript_support_level": null,
"aa_start": 239,
"aa_end": null,
"aa_length": 281,
"cds_start": 715,
"cds_end": null,
"cds_length": 846,
"cdna_start": 1007,
"cdna_end": null,
"cdna_length": 1691,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860788.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000972446.1",
"protein_id": "ENSP00000642505.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 269,
"cds_start": 721,
"cds_end": null,
"cds_length": 810,
"cdna_start": 817,
"cdna_end": null,
"cdna_length": 1459,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000972446.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "ENST00000972444.1",
"protein_id": "ENSP00000642503.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 266,
"cds_start": 721,
"cds_end": null,
"cds_length": 801,
"cdna_start": 994,
"cdna_end": null,
"cdna_length": 1549,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000972444.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.658G>T",
"hgvs_p": "p.Val220Phe",
"transcript": "ENST00000860785.1",
"protein_id": "ENSP00000530844.1",
"transcript_support_level": null,
"aa_start": 220,
"aa_end": null,
"aa_length": 262,
"cds_start": 658,
"cds_end": null,
"cds_length": 789,
"cdna_start": 785,
"cdna_end": null,
"cdna_length": 1477,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860785.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "XM_047433412.1",
"protein_id": "XP_047289368.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 1253,
"cdna_end": null,
"cdna_length": 1940,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433412.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "XM_047433413.1",
"protein_id": "XP_047289369.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 851,
"cdna_end": null,
"cdna_length": 1538,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433413.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "XM_047433414.1",
"protein_id": "XP_047289370.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 1262,
"cdna_end": null,
"cdna_length": 1949,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433414.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "XM_047433416.1",
"protein_id": "XP_047289372.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
"cds_end": null,
"cds_length": 852,
"cdna_start": 1033,
"cdna_end": null,
"cdna_length": 1720,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047433416.1"
},
{
"aa_ref": "V",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TNFRSF14",
"gene_hgnc_id": 11912,
"hgvs_c": "c.721G>T",
"hgvs_p": "p.Val241Phe",
"transcript": "XM_047433418.1",
"protein_id": "XP_047289374.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 283,
"cds_start": 721,
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}
],
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}