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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-31021628-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=31021628&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 31021628,
"ref": "T",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_001020658.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "NM_001020658.2",
"protein_id": "NP_001018494.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1188,
"cds_start": null,
"cds_end": null,
"cds_length": 3567,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000426105.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001020658.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000426105.7",
"protein_id": "ENSP00000391723.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1188,
"cds_start": null,
"cds_end": null,
"cds_length": 3567,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001020658.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000426105.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.540+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000373741.8",
"protein_id": "ENSP00000362846.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1224,
"cds_start": null,
"cds_end": null,
"cds_length": 3675,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373741.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000257075.9",
"protein_id": "ENSP00000257075.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1186,
"cds_start": null,
"cds_end": null,
"cds_length": 3561,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000257075.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000440538.6",
"protein_id": "ENSP00000401777.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1162,
"cds_start": null,
"cds_end": null,
"cds_length": 3489,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000440538.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883126.1",
"protein_id": "ENSP00000553185.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1250,
"cds_start": null,
"cds_end": null,
"cds_length": 3753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883126.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883151.1",
"protein_id": "ENSP00000553210.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1250,
"cds_start": null,
"cds_end": null,
"cds_length": 3753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883151.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000963563.1",
"protein_id": "ENSP00000633622.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1232,
"cds_start": null,
"cds_end": null,
"cds_length": 3699,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000963563.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883144.1",
"protein_id": "ENSP00000553203.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1230,
"cds_start": null,
"cds_end": null,
"cds_length": 3693,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883144.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883086.1",
"protein_id": "ENSP00000553145.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1228,
"cds_start": null,
"cds_end": null,
"cds_length": 3687,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883086.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883102.1",
"protein_id": "ENSP00000553161.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1227,
"cds_start": null,
"cds_end": null,
"cds_length": 3684,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883102.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883143.1",
"protein_id": "ENSP00000553202.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1227,
"cds_start": null,
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"cds_length": 3684,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883143.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000918939.1",
"protein_id": "ENSP00000588998.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1227,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000918939.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
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"transcript": "ENST00000883115.1",
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"cdna_start": null,
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"biotype": "protein_coding",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883140.1",
"protein_id": "ENSP00000553199.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1225,
"cds_start": null,
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"cds_length": 3678,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883140.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
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"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000918952.1",
"protein_id": "ENSP00000589011.1",
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000918952.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000918946.1",
"protein_id": "ENSP00000589005.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000918946.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883157.1",
"protein_id": "ENSP00000553216.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"feature": "ENST00000883157.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883111.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
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"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
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"protein_id": "ENSP00000553151.1",
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"feature": "ENST00000883092.1"
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000918981.1",
"protein_id": "ENSP00000589040.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000918981.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PUM1",
"gene_hgnc_id": 14957,
"hgvs_c": "c.432+7168A>C",
"hgvs_p": null,
"transcript": "ENST00000883123.1",
"protein_id": "ENSP00000553182.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1211,
"cds_start": null,
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"cds_length": 3636,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000883123.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
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}