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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-32695341-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=32695341&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [],
"effects": [
"missense_variant"
],
"gene_symbol": "SYNC",
"hgnc_id": 28897,
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"inheritance_mode": "AR",
"pathogenic_score": 0,
"score": 0,
"transcript": "NM_030786.3",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "",
"acmg_score": 0,
"allele_count_reference_population": 28,
"alphamissense_prediction": null,
"alphamissense_score": 0.7981,
"alt": "G",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Pathogenic",
"bayesdelnoaf_score": 0.16,
"chr": "1",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Uncertain_significance",
"computational_score_selected": 0.6321099400520325,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 482,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3503,
"cdna_start": 867,
"cds_end": null,
"cds_length": 1449,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_030786.3",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000409190.8",
"protein_coding": true,
"protein_id": "NP_110413.3",
"strand": false,
"transcript": "NM_030786.3",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 482,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 3503,
"cdna_start": 867,
"cds_end": null,
"cds_length": 1449,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000409190.8",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_030786.3",
"protein_coding": true,
"protein_id": "ENSP00000386439.3",
"strand": false,
"transcript": "ENST00000409190.8",
"transcript_support_level": 2
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 507,
"aa_ref": "C",
"aa_start": 278,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2521,
"cdna_start": 948,
"cds_end": null,
"cds_length": 1524,
"cds_start": 832,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000947461.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.832T>C",
"hgvs_p": "p.Cys278Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000617520.1",
"strand": false,
"transcript": "ENST00000947461.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 480,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3035,
"cdna_start": 857,
"cds_end": null,
"cds_length": 1443,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000854990.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525049.1",
"strand": false,
"transcript": "ENST00000854990.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 477,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3339,
"cdna_start": 894,
"cds_end": null,
"cds_length": 1434,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000854989.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000525048.1",
"strand": false,
"transcript": "ENST00000854989.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 476,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3423,
"cdna_start": 867,
"cds_end": null,
"cds_length": 1431,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001161708.2",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001155180.2",
"strand": false,
"transcript": "NM_001161708.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 476,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1824,
"cdna_start": 853,
"cds_end": null,
"cds_length": 1431,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000373484.4",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000362583.3",
"strand": false,
"transcript": "ENST00000373484.4",
"transcript_support_level": 2
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 469,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3279,
"cdna_start": 866,
"cds_end": null,
"cds_length": 1410,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000947460.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000617519.1",
"strand": false,
"transcript": "ENST00000947460.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 553,
"aa_ref": "C",
"aa_start": 253,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5471,
"cdna_start": 867,
"cds_end": null,
"cds_length": 1662,
"cds_start": 757,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_024450010.2",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.757T>C",
"hgvs_p": "p.Cys253Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_024305778.1",
"strand": false,
"transcript": "XM_024450010.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 465,
"aa_ref": "C",
"aa_start": 165,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5402,
"cdna_start": 798,
"cds_end": null,
"cds_length": 1398,
"cds_start": 493,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_024450011.2",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.493T>C",
"hgvs_p": "p.Cys165Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_024305779.1",
"strand": false,
"transcript": "XM_024450011.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 465,
"aa_ref": "C",
"aa_start": 165,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5351,
"cdna_start": 747,
"cds_end": null,
"cds_length": 1398,
"cds_start": 493,
"consequences": [
"missense_variant"
],
"exon_count": 4,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_024450013.2",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.493T>C",
"hgvs_p": "p.Cys165Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_024305781.1",
"strand": false,
"transcript": "XM_024450013.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 394,
"aa_ref": "C",
"aa_start": 165,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3383,
"cdna_start": 747,
"cds_end": null,
"cds_length": 1185,
"cds_start": 493,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_047431210.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.493T>C",
"hgvs_p": "p.Cys165Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047287166.1",
"strand": false,
"transcript": "XM_047431210.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 394,
"aa_ref": "C",
"aa_start": 165,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3434,
"cdna_start": 798,
"cds_end": null,
"cds_length": 1185,
"cds_start": 493,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_047431221.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.493T>C",
"hgvs_p": "p.Cys165Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047287177.1",
"strand": false,
"transcript": "XM_047431221.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 394,
"aa_ref": "C",
"aa_start": 165,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3370,
"cdna_start": 734,
"cds_end": null,
"cds_length": 1185,
"cds_start": 493,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "XM_047431230.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.493T>C",
"hgvs_p": "p.Cys165Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_047287186.1",
"strand": false,
"transcript": "XM_047431230.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 88,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 569,
"cdna_start": null,
"cds_end": null,
"cds_length": 269,
"cds_start": null,
"consequences": [
"downstream_gene_variant"
],
"exon_count": 2,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000417633.1",
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"hgvs_c": "c.*224T>C",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000401975.1",
"strand": true,
"transcript": "ENST00000417633.1",
"transcript_support_level": 4
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs755842604",
"effect": "missense_variant",
"frequency_reference_population": 0.000018048959,
"gene_hgnc_id": 28897,
"gene_symbol": "SYNC",
"gnomad_exomes_ac": 12,
"gnomad_exomes_af": 0.00000857301,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_ac": 16,
"gnomad_genomes_af": 0.000105545,
"gnomad_genomes_homalt": 0,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Uncertain significance",
"phenotype_combined": "not specified",
"phylop100way_prediction": "Pathogenic",
"phylop100way_score": 7.728,
"pos": 32695341,
"ref": "A",
"revel_prediction": "Pathogenic",
"revel_score": 0.753,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0,
"transcript": "NM_030786.3"
}
]
}