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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-42191148-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=42191148&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 42191148,
"ref": "T",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_014947.5",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "NM_014947.5",
"protein_id": "NP_055762.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000361346.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014947.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "ENST00000361346.6",
"protein_id": "ENSP00000354620.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_014947.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000361346.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "ENST00000372572.5",
"protein_id": "ENSP00000361653.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372572.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "NM_001198850.2",
"protein_id": "NP_001185779.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001198850.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "NM_001198851.2",
"protein_id": "NP_001185780.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001198851.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "ENST00000372573.5",
"protein_id": "ENSP00000361654.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372573.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "ENST00000545068.5",
"protein_id": "ENSP00000439044.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000545068.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "ENST00000940311.1",
"protein_id": "ENSP00000610370.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
"cds_end": null,
"cds_length": 1869,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940311.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "ENST00000959443.1",
"protein_id": "ENSP00000629502.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 622,
"cds_start": null,
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"cds_length": 1869,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000959443.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1249+155A>T",
"hgvs_p": null,
"transcript": "NM_001198852.2",
"protein_id": "NP_001185781.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 588,
"cds_start": null,
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"cds_length": 1767,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001198852.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1249+155A>T",
"hgvs_p": null,
"transcript": "ENST00000361776.5",
"protein_id": "ENSP00000354449.1",
"transcript_support_level": 5,
"aa_start": null,
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"cds_start": null,
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"cdna_start": null,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 12,
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"gene_symbol": "FOXJ3",
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"hgvs_c": "c.1249+155A>T",
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"transcript": "ENST00000861681.1",
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"feature": "ENST00000861681.1"
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 8,
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"gene_symbol": "FOXJ3",
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"hgvs_c": "c.1249+155A>T",
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"transcript": "ENST00000861682.1",
"protein_id": "ENSP00000531741.1",
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"biotype": "protein_coding",
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},
{
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],
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"gene_symbol": "FOXJ3",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1375+155A>T",
"hgvs_p": null,
"transcript": "XM_005270632.5",
"protein_id": "XP_005270689.1",
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"cds_start": null,
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},
{
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],
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"exon_count": 14,
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"gene_symbol": "FOXJ3",
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"hgvs_c": "c.1351+155A>T",
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},
{
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"strand": false,
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],
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"exon_count": 14,
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"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1351+155A>T",
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"transcript": "XM_047449471.1",
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},
{
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],
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"exon_count": 14,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
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"hgvs_c": "c.1351+155A>T",
"hgvs_p": null,
"transcript": "XM_047449474.1",
"protein_id": "XP_047305430.1",
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},
{
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],
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"gene_symbol": "FOXJ3",
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},
{
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],
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"gene_symbol": "FOXJ3",
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"hgvs_c": "c.1306+155A>T",
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},
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],
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"gene_symbol": "FOXJ3",
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"transcript": "XM_047449486.1",
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"biotype": "protein_coding",
"feature": "XM_047449486.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "FOXJ3",
"gene_hgnc_id": 29178,
"hgvs_c": "c.1273+155A>T",
"hgvs_p": null,
"transcript": "XM_006710459.4",
"protein_id": "XP_006710522.1",
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},
{
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"consequences": [
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],
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}
],
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}