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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-44218359-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=44218359&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 44218359,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_019100.5",
"consequences": [
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "NM_019100.5",
"protein_id": "NP_061973.1",
"transcript_support_level": null,
"aa_start": 148,
"aa_end": null,
"aa_length": 467,
"cds_start": 442,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000372289.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_019100.5"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000372289.7",
"protein_id": "ENSP00000361363.2",
"transcript_support_level": 1,
"aa_start": 148,
"aa_end": null,
"aa_length": 467,
"cds_start": 442,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_019100.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372289.7"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000315913.9",
"protein_id": "ENSP00000312697.5",
"transcript_support_level": 1,
"aa_start": 148,
"aa_end": null,
"aa_length": 467,
"cds_start": 442,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000315913.9"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000361745.10",
"protein_id": "ENSP00000354697.6",
"transcript_support_level": 1,
"aa_start": 148,
"aa_end": null,
"aa_length": 467,
"cds_start": 442,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000361745.10"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "n.3527C>T",
"hgvs_p": null,
"transcript": "ENST00000488433.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000488433.5"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.562C>T",
"hgvs_p": "p.His188Tyr",
"transcript": "ENST00000942392.1",
"protein_id": "ENSP00000612451.1",
"transcript_support_level": null,
"aa_start": 188,
"aa_end": null,
"aa_length": 507,
"cds_start": 562,
"cds_end": null,
"cds_length": 1524,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000942392.1"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.520C>T",
"hgvs_p": "p.His174Tyr",
"transcript": "ENST00000891875.1",
"protein_id": "ENSP00000561934.1",
"transcript_support_level": null,
"aa_start": 174,
"aa_end": null,
"aa_length": 493,
"cds_start": 520,
"cds_end": null,
"cds_length": 1482,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000891875.1"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000924540.1",
"protein_id": "ENSP00000594599.1",
"transcript_support_level": null,
"aa_start": 148,
"aa_end": null,
"aa_length": 471,
"cds_start": 442,
"cds_end": null,
"cds_length": 1416,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000924540.1"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "NM_001034023.2",
"protein_id": "NP_001029195.1",
"transcript_support_level": null,
"aa_start": 148,
"aa_end": null,
"aa_length": 467,
"cds_start": 442,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001034023.2"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "NM_001034024.2",
"protein_id": "NP_001029196.1",
"transcript_support_level": null,
"aa_start": 148,
"aa_end": null,
"aa_length": 467,
"cds_start": 442,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001034024.2"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000891874.1",
"protein_id": "ENSP00000561933.1",
"transcript_support_level": null,
"aa_start": 148,
"aa_end": null,
"aa_length": 466,
"cds_start": 442,
"cds_end": null,
"cds_length": 1401,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000891874.1"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.433C>T",
"hgvs_p": "p.His145Tyr",
"transcript": "ENST00000891876.1",
"protein_id": "ENSP00000561935.1",
"transcript_support_level": null,
"aa_start": 145,
"aa_end": null,
"aa_length": 464,
"cds_start": 433,
"cds_end": null,
"cds_length": 1395,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000891876.1"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.415C>T",
"hgvs_p": "p.His139Tyr",
"transcript": "ENST00000942393.1",
"protein_id": "ENSP00000612452.1",
"transcript_support_level": null,
"aa_start": 139,
"aa_end": null,
"aa_length": 458,
"cds_start": 415,
"cds_end": null,
"cds_length": 1377,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000942393.1"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000446292.5",
"protein_id": "ENSP00000409200.1",
"transcript_support_level": 3,
"aa_start": 148,
"aa_end": null,
"aa_length": 301,
"cds_start": 442,
"cds_end": null,
"cds_length": 906,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000446292.5"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.520C>T",
"hgvs_p": "p.His174Tyr",
"transcript": "ENST00000437511.5",
"protein_id": "ENSP00000402494.1",
"transcript_support_level": 3,
"aa_start": 174,
"aa_end": null,
"aa_length": 284,
"cds_start": 520,
"cds_end": null,
"cds_length": 857,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000437511.5"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr",
"transcript": "ENST00000440641.5",
"protein_id": "ENSP00000401099.1",
"transcript_support_level": 3,
"aa_start": 148,
"aa_end": null,
"aa_length": 236,
"cds_start": 442,
"cds_end": null,
"cds_length": 712,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000440641.5"
},
{
"aa_ref": "H",
"aa_alt": "Y",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "c.325C>T",
"hgvs_p": "p.His109Tyr",
"transcript": "ENST00000372290.4",
"protein_id": "ENSP00000361364.4",
"transcript_support_level": 5,
"aa_start": 109,
"aa_end": null,
"aa_length": 131,
"cds_start": 325,
"cds_end": null,
"cds_length": 396,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372290.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "n.853C>T",
"hgvs_p": null,
"transcript": "ENST00000471829.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000471829.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000302536",
"gene_hgnc_id": null,
"hgvs_c": "n.67+2175G>A",
"hgvs_p": null,
"transcript": "ENST00000787675.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000787675.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000302536",
"gene_hgnc_id": null,
"hgvs_c": "n.73+2175G>A",
"hgvs_p": null,
"transcript": "ENST00000787676.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000787676.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000302536",
"gene_hgnc_id": null,
"hgvs_c": "n.73+2175G>A",
"hgvs_p": null,
"transcript": "ENST00000787677.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000787677.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "n.-6C>T",
"hgvs_p": null,
"transcript": "ENST00000483741.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000483741.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"hgvs_c": "n.*68C>T",
"hgvs_p": null,
"transcript": "ENST00000487922.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000487922.5"
}
],
"gene_symbol": "DMAP1",
"gene_hgnc_id": 18291,
"dbsnp": "rs769065111",
"frequency_reference_population": 0.0000024781828,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": 0.00000205214,
"gnomad_genomes_af": 0.00000657039,
"gnomad_exomes_ac": 3,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.4273916780948639,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.029999999329447746,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.225,
"revel_prediction": "Benign",
"alphamissense_score": 0.2006,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.21,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 7.35,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.03,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_019100.5",
"gene_symbol": "DMAP1",
"hgnc_id": 18291,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.442C>T",
"hgvs_p": "p.His148Tyr"
},
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000787675.1",
"gene_symbol": "ENSG00000302536",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.67+2175G>A",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}