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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-53062236-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=53062236&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 53062236,
      "ref": "C",
      "alt": "G",
      "effect": "5_prime_UTR_variant",
      "transcript": "NM_153703.5",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "NM_153703.5",
          "protein_id": "NP_714914.3",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000312553.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_153703.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "ENST00000312553.10",
          "protein_id": "ENSP00000308315.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_153703.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000312553.10"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-287C>G",
          "hgvs_p": null,
          "transcript": "ENST00000371500.8",
          "protein_id": "ENSP00000360555.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 642,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1929,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000371500.8"
        },
        {
          "aa_ref": "A",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.17C>G",
          "hgvs_p": "p.Ala6Gly",
          "transcript": "ENST00000395871.7",
          "protein_id": "ENSP00000379212.3",
          "transcript_support_level": 5,
          "aa_start": 6,
          "aa_end": null,
          "aa_length": 661,
          "cds_start": 17,
          "cds_end": null,
          "cds_length": 1986,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000395871.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-97C>G",
          "hgvs_p": null,
          "transcript": "ENST00000618387.1",
          "protein_id": "ENSP00000479233.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 642,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1929,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000618387.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895714.1",
          "protein_id": "ENSP00000565773.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 618,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1857,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895714.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-374C>G",
          "hgvs_p": null,
          "transcript": "NM_001199080.4",
          "protein_id": "NP_001186009.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001199080.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-184C>G",
          "hgvs_p": null,
          "transcript": "NM_001199081.3",
          "protein_id": "NP_001186010.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001199081.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-318C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895711.1",
          "protein_id": "ENSP00000565770.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895711.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895712.1",
          "protein_id": "ENSP00000565771.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895712.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895713.1",
          "protein_id": "ENSP00000565772.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1842,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000895713.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-219C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895715.1",
          "protein_id": "ENSP00000565774.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
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          "cds_length": 1842,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895715.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-1299C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895717.1",
          "protein_id": "ENSP00000565776.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895717.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-1435C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895718.1",
          "protein_id": "ENSP00000565777.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
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          "cds_length": 1842,
          "cdna_start": null,
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          "cdna_length": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000895718.1"
        },
        {
          "aa_ref": null,
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          "strand": true,
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          ],
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          "exon_count": 12,
          "intron_rank": null,
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          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-177C>G",
          "hgvs_p": null,
          "transcript": "ENST00000895719.1",
          "protein_id": "ENSP00000565778.1",
          "transcript_support_level": null,
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          "cds_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "ENST00000961067.1",
          "protein_id": "ENSP00000631126.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 613,
          "cds_start": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000961067.1"
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        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": true,
          "consequences": [
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          ],
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          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-199C>G",
          "hgvs_p": null,
          "transcript": "ENST00000961070.1",
          "protein_id": "ENSP00000631129.1",
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        {
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          "exon_count": 13,
          "intron_rank": null,
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          "gene_symbol": "PODN",
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          "protein_id": "ENSP00000631130.1",
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "PODN",
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          "hgvs_c": "c.-128C>G",
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          "biotype": "protein_coding",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PODN",
          "gene_hgnc_id": 23174,
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null,
          "transcript": "ENST00000961069.1",
          "protein_id": "ENSP00000631128.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 581,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1746,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000961069.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
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          "hgvs_c": "n.24C>G",
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          "biotype": "pseudogene",
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      ],
      "gene_symbol": "PODN",
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      "dbsnp": "rs373469809",
      "frequency_reference_population": 0.000033854998,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 38,
      "gnomad_exomes_af": 0.000033855,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 38,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.29312899708747864,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.034,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0723,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.57,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.537,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 1,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_by_gene": [
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_153703.5",
          "gene_symbol": "PODN",
          "hgnc_id": 23174,
          "effects": [
            "5_prime_UTR_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "c.-128C>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}