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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-66725401-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=66725401&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 66725401,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000371037.9",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1743-3863T>C",
"hgvs_p": null,
"transcript": "NM_032291.4",
"protein_id": "NP_115667.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 828,
"cds_start": -4,
"cds_end": null,
"cds_length": 2487,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10737,
"mane_select": "ENST00000371037.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1743-3863T>C",
"hgvs_p": null,
"transcript": "ENST00000371037.9",
"protein_id": "ENSP00000360076.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 828,
"cds_start": -4,
"cds_end": null,
"cds_length": 2487,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10737,
"mane_select": "NM_032291.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1152-3863T>C",
"hgvs_p": null,
"transcript": "ENST00000371039.5",
"protein_id": "ENSP00000360078.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 631,
"cds_start": -4,
"cds_end": null,
"cds_length": 1896,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4080,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1836-3863T>C",
"hgvs_p": null,
"transcript": "ENST00000237247.10",
"protein_id": "ENSP00000237247.6",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 859,
"cds_start": -4,
"cds_end": null,
"cds_length": 2580,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3997,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1824-3863T>C",
"hgvs_p": null,
"transcript": "ENST00000684651.1",
"protein_id": "ENSP00000507629.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 855,
"cds_start": -4,
"cds_end": null,
"cds_length": 2568,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3266,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1755-3863T>C",
"hgvs_p": null,
"transcript": "NM_001350217.2",
"protein_id": "NP_001337146.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 832,
"cds_start": -4,
"cds_end": null,
"cds_length": 2499,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10749,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1743-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376534.1",
"protein_id": "NP_001363463.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 828,
"cds_start": -4,
"cds_end": null,
"cds_length": 2487,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10724,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1743-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376535.1",
"protein_id": "NP_001363464.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 828,
"cds_start": -4,
"cds_end": null,
"cds_length": 2487,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10691,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1737-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376537.1",
"protein_id": "NP_001363466.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 826,
"cds_start": -4,
"cds_end": null,
"cds_length": 2481,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10731,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1719-3863T>C",
"hgvs_p": null,
"transcript": "ENST00000683499.1",
"protein_id": "ENSP00000506830.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 820,
"cds_start": -4,
"cds_end": null,
"cds_length": 2463,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8699,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1695-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376538.1",
"protein_id": "NP_001363467.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 812,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
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"hgvs_c": "c.1683-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376539.1",
"protein_id": "NP_001363468.1",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 18,
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"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1683-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376540.1",
"protein_id": "NP_001363469.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 25,
"intron_rank": 19,
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"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1671-3863T>C",
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"transcript": "NM_001376541.1",
"protein_id": "NP_001363470.1",
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},
{
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],
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"intron_rank": 19,
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"gene_symbol": "SGIP1",
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"hgvs_c": "c.1671-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376542.1",
"protein_id": "NP_001363471.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 18,
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"gene_symbol": "SGIP1",
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"hgvs_c": "c.1671-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376543.1",
"protein_id": "NP_001363472.1",
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},
{
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],
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"intron_rank": 17,
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"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1647-3863T>C",
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"transcript": "ENST00000682054.1",
"protein_id": "ENSP00000508116.1",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"exon_count": 22,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1647-3863T>C",
"hgvs_p": null,
"transcript": "ENST00000683581.1",
"protein_id": "ENSP00000507528.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 17,
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"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1611-3863T>C",
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"transcript": "NM_001376544.1",
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],
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"intron_rank": 18,
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"gene_symbol": "SGIP1",
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"hgvs_c": "c.1611-3863T>C",
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},
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],
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"gene_symbol": "SGIP1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 24,
"intron_rank": 18,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1254-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376546.1",
"protein_id": "NP_001363475.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "SGIP1",
"gene_hgnc_id": 25412,
"hgvs_c": "c.1224-3863T>C",
"hgvs_p": null,
"transcript": "NM_001376547.1",
"protein_id": "NP_001363476.1",
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