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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-6825129-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=6825129&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 6825129,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_015215.4",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_015215.4",
"protein_id": "NP_056030.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1673,
"cds_start": 153,
"cds_end": null,
"cds_length": 5022,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 8314,
"mane_select": "ENST00000303635.12",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "ENST00000303635.12",
"protein_id": "ENSP00000306522.6",
"transcript_support_level": 1,
"aa_start": 51,
"aa_end": null,
"aa_length": 1673,
"cds_start": 153,
"cds_end": null,
"cds_length": 5022,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 8314,
"mane_select": "NM_015215.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "ENST00000476864.2",
"protein_id": "ENSP00000452319.2",
"transcript_support_level": 1,
"aa_start": 51,
"aa_end": null,
"aa_length": 1560,
"cds_start": 153,
"cds_end": null,
"cds_length": 4683,
"cdna_start": 166,
"cdna_end": null,
"cdna_length": 6282,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "ENST00000473578.5",
"protein_id": "ENSP00000451388.1",
"transcript_support_level": 1,
"aa_start": 51,
"aa_end": null,
"aa_length": 80,
"cds_start": 153,
"cds_end": null,
"cds_length": 243,
"cdna_start": 204,
"cdna_end": null,
"cdna_length": 567,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.63C>T",
"hgvs_p": "p.Ile21Ile",
"transcript": "NM_001349608.2",
"protein_id": "NP_001336537.1",
"transcript_support_level": null,
"aa_start": 21,
"aa_end": null,
"aa_length": 1643,
"cds_start": 63,
"cds_end": null,
"cds_length": 4932,
"cdna_start": 160,
"cdna_end": null,
"cdna_length": 8244,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_001349609.2",
"protein_id": "NP_001336538.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1567,
"cds_start": 153,
"cds_end": null,
"cds_length": 4704,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 7965,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_001349610.2",
"protein_id": "NP_001336539.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1565,
"cds_start": 153,
"cds_end": null,
"cds_length": 4698,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 7990,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_001410737.1",
"protein_id": "NP_001397666.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1560,
"cds_start": 153,
"cds_end": null,
"cds_length": 4683,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 7944,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.63C>T",
"hgvs_p": "p.Ile21Ile",
"transcript": "NM_001349612.2",
"protein_id": "NP_001336541.1",
"transcript_support_level": null,
"aa_start": 21,
"aa_end": null,
"aa_length": 1537,
"cds_start": 63,
"cds_end": null,
"cds_length": 4614,
"cdna_start": 160,
"cdna_end": null,
"cdna_length": 7926,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.63C>T",
"hgvs_p": "p.Ile21Ile",
"transcript": "ENST00000700415.1",
"protein_id": "ENSP00000514979.1",
"transcript_support_level": null,
"aa_start": 21,
"aa_end": null,
"aa_length": 1537,
"cds_start": 63,
"cds_end": null,
"cds_length": 4614,
"cdna_start": 117,
"cdna_end": null,
"cdna_length": 5986,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_001410738.1",
"protein_id": "NP_001397667.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1536,
"cds_start": 153,
"cds_end": null,
"cds_length": 4611,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 7872,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "ENST00000700417.1",
"protein_id": "ENSP00000514981.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1536,
"cds_start": 153,
"cds_end": null,
"cds_length": 4611,
"cdna_start": 153,
"cdna_end": null,
"cdna_length": 5929,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_001242701.2",
"protein_id": "NP_001229630.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 101,
"cds_start": 153,
"cds_end": null,
"cds_length": 306,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 859,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "ENST00000557126.5",
"protein_id": "ENSP00000451510.1",
"transcript_support_level": 2,
"aa_start": 51,
"aa_end": null,
"aa_length": 101,
"cds_start": 153,
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"cds_length": 306,
"cdna_start": 193,
"cdna_end": null,
"cdna_length": 486,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.189C>T",
"hgvs_p": "p.Ile63Ile",
"transcript": "NM_001349627.2",
"protein_id": "NP_001336556.1",
"transcript_support_level": null,
"aa_start": 63,
"aa_end": null,
"aa_length": 92,
"cds_start": 189,
"cds_end": null,
"cds_length": 279,
"cdna_start": 266,
"cdna_end": null,
"cdna_length": 607,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.189C>T",
"hgvs_p": "p.Ile63Ile",
"transcript": "ENST00000467404.6",
"protein_id": "ENSP00000450530.1",
"transcript_support_level": 3,
"aa_start": 63,
"aa_end": null,
"aa_length": 92,
"cds_start": 189,
"cds_end": null,
"cds_length": 279,
"cdna_start": 202,
"cdna_end": null,
"cdna_length": 546,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "ENST00000700416.1",
"protein_id": "ENSP00000514980.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 83,
"cds_start": 153,
"cds_end": null,
"cds_length": 252,
"cdna_start": 181,
"cdna_end": null,
"cdna_length": 2206,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "NM_001195563.2",
"protein_id": "NP_001182492.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 80,
"cds_start": 153,
"cds_end": null,
"cds_length": 243,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 571,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "XM_011541083.3",
"protein_id": "XP_011539385.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1680,
"cds_start": 153,
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"cdna_start": 230,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "XM_011541084.3",
"protein_id": "XP_011539386.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1680,
"cds_start": 153,
"cds_end": null,
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"cdna_start": 230,
"cdna_end": null,
"cdna_length": 8335,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.141C>T",
"hgvs_p": "p.Ile47Ile",
"transcript": "XM_047415988.1",
"protein_id": "XP_047271944.1",
"transcript_support_level": null,
"aa_start": 47,
"aa_end": null,
"aa_length": 1676,
"cds_start": 141,
"cds_end": null,
"cds_length": 5031,
"cdna_start": 976,
"cdna_end": null,
"cdna_length": 9050,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "XM_011541086.4",
"protein_id": "XP_011539388.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 1673,
"cds_start": 153,
"cds_end": null,
"cds_length": 5022,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 8283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "I",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMTA1",
"gene_hgnc_id": 18806,
"hgvs_c": "c.153C>T",
"hgvs_p": "p.Ile51Ile",
"transcript": "XM_017000774.3",
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],
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"splice_prediction_selected": "Benign",
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"bayesdelnoaf_score": -0.19,
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{
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"verdict": "Uncertain_significance",
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],
"clinvar_disease": "",
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"clinvar_review_status": "",
"clinvar_submissions_summary": "",
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"custom_annotations": null
}
],
"message": null
}