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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-75762716-CAA-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=75762716&ref=CAA&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 75762716,
      "ref": "CAA",
      "alt": "C",
      "effect": "frameshift_variant",
      "transcript": "NM_001286043.2",
      "consequences": [
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1221_1222delAA",
          "hgvs_p": "p.Arg408fs",
          "transcript": "NM_000016.6",
          "protein_id": "NP_000007.1",
          "transcript_support_level": null,
          "aa_start": 407,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": 1221,
          "cds_end": null,
          "cds_length": 1266,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000370841.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000016.6"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1221_1222delAA",
          "hgvs_p": "p.Arg408fs",
          "transcript": "ENST00000370841.9",
          "protein_id": "ENSP00000359878.5",
          "transcript_support_level": 1,
          "aa_start": 407,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": 1221,
          "cds_end": null,
          "cds_length": 1266,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000016.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000370841.9"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1320_1321delAA",
          "hgvs_p": "p.Arg441fs",
          "transcript": "ENST00000370834.9",
          "protein_id": "ENSP00000359871.5",
          "transcript_support_level": 1,
          "aa_start": 440,
          "aa_end": null,
          "aa_length": 454,
          "cds_start": 1320,
          "cds_end": null,
          "cds_length": 1365,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000370834.9"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1233_1234delAA",
          "hgvs_p": "p.Arg412fs",
          "transcript": "ENST00000420607.6",
          "protein_id": "ENSP00000409612.2",
          "transcript_support_level": 1,
          "aa_start": 411,
          "aa_end": null,
          "aa_length": 425,
          "cds_start": 1233,
          "cds_end": null,
          "cds_length": 1278,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000420607.6"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1125_1126delAA",
          "hgvs_p": "p.Arg376fs",
          "transcript": "ENST00000541113.6",
          "protein_id": "ENSP00000442324.2",
          "transcript_support_level": 1,
          "aa_start": 375,
          "aa_end": null,
          "aa_length": 389,
          "cds_start": 1125,
          "cds_end": null,
          "cds_length": 1170,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541113.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "n.*989_*990delAA",
          "hgvs_p": null,
          "transcript": "ENST00000526196.5",
          "protein_id": "ENSP00000431953.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000526196.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "n.*989_*990delAA",
          "hgvs_p": null,
          "transcript": "ENST00000526196.5",
          "protein_id": "ENSP00000431953.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000526196.5"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1320_1321delAA",
          "hgvs_p": "p.Arg441fs",
          "transcript": "NM_001286043.2",
          "protein_id": "NP_001272972.1",
          "transcript_support_level": null,
          "aa_start": 440,
          "aa_end": null,
          "aa_length": 454,
          "cds_start": 1320,
          "cds_end": null,
          "cds_length": 1365,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001286043.2"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1317_1318delAA",
          "hgvs_p": "p.Arg440fs",
          "transcript": "ENST00000879989.1",
          "protein_id": "ENSP00000550048.1",
          "transcript_support_level": null,
          "aa_start": 439,
          "aa_end": null,
          "aa_length": 453,
          "cds_start": 1317,
          "cds_end": null,
          "cds_length": 1362,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879989.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1269_1270delAA",
          "hgvs_p": "p.Arg424fs",
          "transcript": "ENST00000879990.1",
          "protein_id": "ENSP00000550049.1",
          "transcript_support_level": null,
          "aa_start": 423,
          "aa_end": null,
          "aa_length": 437,
          "cds_start": 1269,
          "cds_end": null,
          "cds_length": 1314,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879990.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1233_1234delAA",
          "hgvs_p": "p.Arg412fs",
          "transcript": "NM_001127328.3",
          "protein_id": "NP_001120800.1",
          "transcript_support_level": null,
          "aa_start": 411,
          "aa_end": null,
          "aa_length": 425,
          "cds_start": 1233,
          "cds_end": null,
          "cds_length": 1278,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001127328.3"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1221_1222delAA",
          "hgvs_p": "p.Arg408fs",
          "transcript": "ENST00000927351.1",
          "protein_id": "ENSP00000597410.1",
          "transcript_support_level": null,
          "aa_start": 407,
          "aa_end": null,
          "aa_length": 421,
          "cds_start": 1221,
          "cds_end": null,
          "cds_length": 1266,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000927351.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1218_1219delAA",
          "hgvs_p": "p.Arg407fs",
          "transcript": "ENST00000879991.1",
          "protein_id": "ENSP00000550050.1",
          "transcript_support_level": null,
          "aa_start": 406,
          "aa_end": null,
          "aa_length": 420,
          "cds_start": 1218,
          "cds_end": null,
          "cds_length": 1263,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879991.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1218_1219delAA",
          "hgvs_p": "p.Arg407fs",
          "transcript": "ENST00000956292.1",
          "protein_id": "ENSP00000626351.1",
          "transcript_support_level": null,
          "aa_start": 406,
          "aa_end": null,
          "aa_length": 420,
          "cds_start": 1218,
          "cds_end": null,
          "cds_length": 1263,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956292.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1215_1216delAA",
          "hgvs_p": "p.Arg406fs",
          "transcript": "ENST00000879987.1",
          "protein_id": "ENSP00000550046.1",
          "transcript_support_level": null,
          "aa_start": 405,
          "aa_end": null,
          "aa_length": 419,
          "cds_start": 1215,
          "cds_end": null,
          "cds_length": 1260,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879987.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1140_1141delAA",
          "hgvs_p": "p.Arg381fs",
          "transcript": "ENST00000879995.1",
          "protein_id": "ENSP00000550054.1",
          "transcript_support_level": null,
          "aa_start": 380,
          "aa_end": null,
          "aa_length": 394,
          "cds_start": 1140,
          "cds_end": null,
          "cds_length": 1185,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879995.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1113_1114delAA",
          "hgvs_p": "p.Arg372fs",
          "transcript": "NM_001286042.2",
          "protein_id": "NP_001272971.1",
          "transcript_support_level": null,
          "aa_start": 371,
          "aa_end": null,
          "aa_length": 385,
          "cds_start": 1113,
          "cds_end": null,
          "cds_length": 1158,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001286042.2"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1092_1093delAA",
          "hgvs_p": "p.Arg365fs",
          "transcript": "ENST00000879992.1",
          "protein_id": "ENSP00000550051.1",
          "transcript_support_level": null,
          "aa_start": 364,
          "aa_end": null,
          "aa_length": 378,
          "cds_start": 1092,
          "cds_end": null,
          "cds_length": 1137,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000879992.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.1080_1081delAA",
          "hgvs_p": "p.Arg361fs",
          "transcript": "ENST00000680805.1",
          "protein_id": "ENSP00000505447.1",
          "transcript_support_level": null,
          "aa_start": 360,
          "aa_end": null,
          "aa_length": 374,
          "cds_start": 1080,
          "cds_end": null,
          "cds_length": 1125,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000680805.1"
        },
        {
          "aa_ref": "QR",
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACADM",
          "gene_hgnc_id": 89,
          "hgvs_c": "c.984_985delAA",
          "hgvs_p": "p.Arg329fs",
          "transcript": "ENST00000879994.1",
          "protein_id": "ENSP00000550053.1",
          "transcript_support_level": null,
          "aa_start": 328,
          "aa_end": null,
          "aa_length": 342,
          "cds_start": 984,
          "cds_end": null,
          "cds_length": 1029,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
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      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:3 LP:1",
      "phenotype_combined": "not provided|Medium-chain acyl-coenzyme A dehydrogenase deficiency",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
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  "message": null
}