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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-77968172-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=77968172&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 77968172,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "ENST00000370768.7",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "NM_003902.5",
"protein_id": "NP_003893.2",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 644,
"cds_start": 243,
"cds_end": null,
"cds_length": 1935,
"cdna_start": 311,
"cdna_end": null,
"cdna_length": 6714,
"mane_select": "ENST00000370768.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "ENST00000370768.7",
"protein_id": "ENSP00000359804.2",
"transcript_support_level": 1,
"aa_start": 81,
"aa_end": null,
"aa_length": 644,
"cds_start": 243,
"cds_end": null,
"cds_length": 1935,
"cdna_start": 311,
"cdna_end": null,
"cdna_length": 6714,
"mane_select": "NM_003902.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "n.243A>G",
"hgvs_p": null,
"transcript": "ENST00000294623.8",
"protein_id": "ENSP00000294623.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2201,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "NM_001410804.1",
"protein_id": "NP_001397733.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 687,
"cds_start": 306,
"cds_end": null,
"cds_length": 2064,
"cdna_start": 374,
"cdna_end": null,
"cdna_length": 3689,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "ENST00000421641.2",
"protein_id": "ENSP00000402630.2",
"transcript_support_level": 5,
"aa_start": 102,
"aa_end": null,
"aa_length": 687,
"cds_start": 306,
"cds_end": null,
"cds_length": 2064,
"cdna_start": 412,
"cdna_end": null,
"cdna_length": 3426,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "NM_001376056.1",
"protein_id": "NP_001362985.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 666,
"cds_start": 243,
"cds_end": null,
"cds_length": 2001,
"cdna_start": 311,
"cdna_end": null,
"cdna_length": 3626,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "ENST00000703586.1",
"protein_id": "ENSP00000515388.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 666,
"cds_start": 243,
"cds_end": null,
"cds_length": 2001,
"cdna_start": 316,
"cdna_end": null,
"cdna_length": 3330,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "NM_001303433.2",
"protein_id": "NP_001290362.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 665,
"cds_start": 306,
"cds_end": null,
"cds_length": 1998,
"cdna_start": 374,
"cdna_end": null,
"cdna_length": 6777,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "NM_001376055.1",
"protein_id": "NP_001362984.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 664,
"cds_start": 306,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 374,
"cdna_end": null,
"cdna_length": 6774,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "ENST00000370767.5",
"protein_id": "ENSP00000359803.1",
"transcript_support_level": 5,
"aa_start": 81,
"aa_end": null,
"aa_length": 655,
"cds_start": 243,
"cds_end": null,
"cds_length": 1968,
"cdna_start": 331,
"cdna_end": null,
"cdna_length": 2524,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "NM_001376057.1",
"protein_id": "NP_001362986.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 643,
"cds_start": 243,
"cds_end": null,
"cds_length": 1932,
"cdna_start": 311,
"cdna_end": null,
"cdna_length": 6711,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "XM_017002739.2",
"protein_id": "XP_016858228.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 688,
"cds_start": 306,
"cds_end": null,
"cds_length": 2067,
"cdna_start": 466,
"cdna_end": null,
"cdna_length": 3784,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "XM_017002740.3",
"protein_id": "XP_016858229.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 675,
"cds_start": 306,
"cds_end": null,
"cds_length": 2028,
"cdna_start": 374,
"cdna_end": null,
"cdna_length": 5555,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "XM_047433485.1",
"protein_id": "XP_047289441.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 667,
"cds_start": 243,
"cds_end": null,
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"cdna_start": 403,
"cdna_end": null,
"cdna_length": 3721,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "XM_047433487.1",
"protein_id": "XP_047289443.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 666,
"cds_start": 243,
"cds_end": null,
"cds_length": 2001,
"cdna_start": 403,
"cdna_end": null,
"cdna_length": 3718,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "XM_047433488.1",
"protein_id": "XP_047289444.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
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"cds_start": 306,
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"cds_length": 1998,
"cdna_start": 466,
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"cdna_length": 6869,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "XM_047433489.1",
"protein_id": "XP_047289445.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 664,
"cds_start": 306,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 466,
"cdna_end": null,
"cdna_length": 6866,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.306A>G",
"hgvs_p": "p.Gln102Gln",
"transcript": "XM_047433491.1",
"protein_id": "XP_047289447.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 664,
"cds_start": 306,
"cds_end": null,
"cds_length": 1995,
"cdna_start": 374,
"cdna_end": null,
"cdna_length": 5550,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "XM_017002743.3",
"protein_id": "XP_016858232.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 653,
"cds_start": 243,
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"cdna_start": 311,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "XM_047433492.1",
"protein_id": "XP_047289448.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 644,
"cds_start": 243,
"cds_end": null,
"cds_length": 1935,
"cdna_start": 403,
"cdna_end": null,
"cdna_length": 6806,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "Q",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "c.243A>G",
"hgvs_p": "p.Gln81Gln",
"transcript": "XM_047433493.1",
"protein_id": "XP_047289449.1",
"transcript_support_level": null,
"aa_start": 81,
"aa_end": null,
"aa_length": 643,
"cds_start": 243,
"cds_end": null,
"cds_length": 1932,
"cdna_start": 403,
"cdna_end": null,
"cdna_length": 6803,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "n.311A>G",
"hgvs_p": null,
"transcript": "NR_130152.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2186,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FUBP1",
"gene_hgnc_id": 4004,
"hgvs_c": "n.311A>G",
"hgvs_p": null,
"transcript": "NR_146539.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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