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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-85853205-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=85853205&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 85853205,
"ref": "A",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000370571.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 60,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.3301-3799T>A",
"hgvs_p": null,
"transcript": "NM_152890.7",
"protein_id": "NP_690850.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1714,
"cds_start": -4,
"cds_end": null,
"cds_length": 5145,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6834,
"mane_select": "ENST00000370571.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 60,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.3301-3799T>A",
"hgvs_p": null,
"transcript": "ENST00000370571.7",
"protein_id": "ENSP00000359603.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1714,
"cds_start": -4,
"cds_end": null,
"cds_length": 5145,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6834,
"mane_select": "NM_152890.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 60,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.1201-3799T>A",
"hgvs_p": null,
"transcript": "NM_001349955.1",
"protein_id": "NP_001336884.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1014,
"cds_start": -4,
"cds_end": null,
"cds_length": 3045,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6529,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 59,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.*751-3799T>A",
"hgvs_p": null,
"transcript": "ENST00000426639.5",
"protein_id": "ENSP00000409515.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6036,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 61,
"intron_rank": 39,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.3494-3799T>A",
"hgvs_p": null,
"transcript": "NR_146340.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6607,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 61,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.3691-3799T>A",
"hgvs_p": null,
"transcript": "NR_146341.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6848,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 61,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.3669-3799T>A",
"hgvs_p": null,
"transcript": "NR_146342.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6955,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 60,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.3348-3799T>A",
"hgvs_p": null,
"transcript": "NR_146343.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6505,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 59,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.3424-3799T>A",
"hgvs_p": null,
"transcript": "NR_146344.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6506,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 60,
"intron_rank": 39,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "n.3525-3799T>A",
"hgvs_p": null,
"transcript": "NR_146345.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 6619,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 62,
"intron_rank": 39,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.3346-3799T>A",
"hgvs_p": null,
"transcript": "XM_017000924.3",
"protein_id": "XP_016856413.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1729,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 62,
"intron_rank": 39,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
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"hgvs_c": "c.3346-3799T>A",
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"transcript": "XM_017000925.3",
"protein_id": "XP_016856414.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 61,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.3346-3799T>A",
"hgvs_p": null,
"transcript": "XM_017000926.2",
"protein_id": "XP_016856415.1",
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"cds_start": -4,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 61,
"intron_rank": 38,
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"gene_symbol": "COL24A1",
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"hgvs_c": "c.3301-3799T>A",
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"transcript": "XM_047417001.1",
"protein_id": "XP_047272957.1",
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},
{
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],
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"gene_symbol": "COL24A1",
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"hgvs_c": "c.3301-3799T>A",
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"transcript": "XM_047417004.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 61,
"intron_rank": 38,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.3301-3799T>A",
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"transcript": "XM_047417005.1",
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},
{
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],
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"gene_symbol": "COL24A1",
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"hgvs_c": "c.3292-3799T>A",
"hgvs_p": null,
"transcript": "XM_017000927.2",
"protein_id": "XP_016856416.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 60,
"intron_rank": 37,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.3247-3799T>A",
"hgvs_p": null,
"transcript": "XM_047417015.1",
"protein_id": "XP_047272971.1",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"exon_count": 60,
"intron_rank": 38,
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"gene_symbol": "COL24A1",
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"hgvs_c": "c.3301-3799T>A",
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"transcript": "XM_047417016.1",
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},
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],
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},
{
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"strand": false,
"consequences": [
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],
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"intron_rank": 20,
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"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
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"hgvs_p": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"hgvs_c": "c.1030-3799T>A",
"hgvs_p": null,
"transcript": "XM_017000929.3",
"protein_id": "XP_016856418.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 957,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 5535,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "COL24A1",
"gene_hgnc_id": 20821,
"dbsnp": "rs313708",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9800000190734863,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.98,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.915,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000370571.7",
"gene_symbol": "COL24A1",
"hgnc_id": 20821,
"effects": [
"intron_variant"
],
"inheritance_mode": "Unknown",
"hgvs_c": "c.3301-3799T>A",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}