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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-94282297-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=94282297&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 94282297,
      "ref": "T",
      "alt": "C",
      "effect": "intron_variant",
      "transcript": "ENST00000654754.1",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29",
          "gene_hgnc_id": 30207,
          "hgvs_c": "c.-111-1895A>G",
          "hgvs_p": null,
          "transcript": "XM_047434754.1",
          "protein_id": "XP_047290710.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1261,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3786,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 9049,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047434754.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29",
          "gene_hgnc_id": 30207,
          "hgvs_c": "c.-111-1895A>G",
          "hgvs_p": null,
          "transcript": "XM_047434759.1",
          "protein_id": "XP_047290715.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1261,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3786,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 8964,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047434759.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.489+31753T>C",
          "hgvs_p": null,
          "transcript": "ENST00000413103.4",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 927,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000413103.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.421+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000418242.3",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 861,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000418242.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.317+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000654754.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 996,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000654754.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.277+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000656153.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1444,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000656153.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.287+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000657152.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 952,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000657152.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.328+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000660441.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 773,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000660441.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.412+24268T>C",
          "hgvs_p": null,
          "transcript": "ENST00000660527.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 808,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000660527.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.545+31753T>C",
          "hgvs_p": null,
          "transcript": "ENST00000662164.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 939,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000662164.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 6,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.276+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000665417.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 852,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000665417.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 3,
          "intron_rank": 2,
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          "gene_symbol": "ARHGAP29-AS1",
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          "hgvs_c": "n.280-410T>C",
          "hgvs_p": null,
          "transcript": "ENST00000666276.1",
          "protein_id": null,
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          "cdna_start": null,
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          "cdna_length": 1603,
          "mane_select": null,
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          "biotype": "pseudogene",
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        },
        {
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          ],
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          "gene_symbol": "ARHGAP29-AS1",
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          "hgvs_c": "n.243+35084T>C",
          "hgvs_p": null,
          "transcript": "ENST00000835309.1",
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        {
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          ],
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          "exon_count": 4,
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          "gene_symbol": "ARHGAP29-AS1",
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          "hgvs_c": "n.370+32778T>C",
          "hgvs_p": null,
          "transcript": "ENST00000835310.1",
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          "mane_select": null,
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        },
        {
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        {
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          "gene_symbol": "ARHGAP29-AS1",
          "gene_hgnc_id": 54311,
          "hgvs_c": "n.490+31753T>C",
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          "transcript": "ENST00000835312.1",
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        {
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          "intron_rank": 1,
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          "gene_symbol": "ARHGAP29-AS1",
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          "hgvs_c": "n.117+4842T>C",
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          "mane_select": null,
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        {
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          "gene_symbol": "ARHGAP29-AS1",
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          "hgvs_c": "n.148-410T>C",
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        {
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          "gene_symbol": "ARHGAP29-AS1",
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          "hgvs_c": "n.105-410T>C",
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          "mane_select": null,
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        },
        {
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          "strand": false,
          "consequences": [
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          ],
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          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000236098",
          "gene_hgnc_id": null,
          "hgvs_c": "n.226-1895A>G",
          "hgvs_p": null,
          "transcript": "ENST00000835449.1",
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          "cdna_start": null,
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          "cdna_length": 726,
          "mane_select": null,
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          "biotype": "pseudogene",
          "feature": "ENST00000835449.1"
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 3,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000236098",
          "gene_hgnc_id": null,
          "hgvs_c": "n.224-747A>G",
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      "bayesdelnoaf_score": -0.87,
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      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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          "verdict": "Likely_benign",
          "transcript": "ENST00000654754.1",
          "gene_symbol": "ARHGAP29-AS1",
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          "pathogenic_score": 2,
          "criteria": [
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            "BP4_Strong"
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          "verdict": "Likely_benign",
          "transcript": "ENST00000835449.1",
          "gene_symbol": "ENSG00000236098",
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          "effects": [
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          "hgvs_c": "n.226-1895A>G",
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        {
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          "pathogenic_score": 2,
          "criteria": [
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            "BP4_Strong"
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          "verdict": "Likely_benign",
          "transcript": "XM_047434754.1",
          "gene_symbol": "ARHGAP29",
          "hgnc_id": 30207,
          "effects": [
            "intron_variant"
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          "hgvs_c": "c.-111-1895A>G",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.