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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-944710-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=944710&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 944710,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_015658.4",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2234T>G",
"hgvs_p": "p.Leu745Arg",
"transcript": "NM_015658.4",
"protein_id": "NP_056473.3",
"transcript_support_level": null,
"aa_start": 745,
"aa_end": null,
"aa_length": 749,
"cds_start": 2234,
"cds_end": null,
"cds_length": 2250,
"cdna_start": 2250,
"cdna_end": null,
"cdna_length": 2757,
"mane_select": "ENST00000327044.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015658.4"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2234T>G",
"hgvs_p": "p.Leu745Arg",
"transcript": "ENST00000327044.7",
"protein_id": "ENSP00000317992.6",
"transcript_support_level": 1,
"aa_start": 745,
"aa_end": null,
"aa_length": 749,
"cds_start": 2234,
"cds_end": null,
"cds_length": 2250,
"cdna_start": 2250,
"cdna_end": null,
"cdna_length": 2757,
"mane_select": "NM_015658.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000327044.7"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2465T>G",
"hgvs_p": "p.Leu822Arg",
"transcript": "ENST00000968819.1",
"protein_id": "ENSP00000638878.1",
"transcript_support_level": null,
"aa_start": 822,
"aa_end": null,
"aa_length": 826,
"cds_start": 2465,
"cds_end": null,
"cds_length": 2481,
"cdna_start": 2481,
"cdna_end": null,
"cdna_length": 2974,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968819.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2351T>G",
"hgvs_p": "p.Leu784Arg",
"transcript": "ENST00000934955.1",
"protein_id": "ENSP00000605014.1",
"transcript_support_level": null,
"aa_start": 784,
"aa_end": null,
"aa_length": 788,
"cds_start": 2351,
"cds_end": null,
"cds_length": 2367,
"cdna_start": 2367,
"cdna_end": null,
"cdna_length": 2861,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934955.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2321T>G",
"hgvs_p": "p.Leu774Arg",
"transcript": "ENST00000934954.1",
"protein_id": "ENSP00000605013.1",
"transcript_support_level": null,
"aa_start": 774,
"aa_end": null,
"aa_length": 778,
"cds_start": 2321,
"cds_end": null,
"cds_length": 2337,
"cdna_start": 2337,
"cdna_end": null,
"cdna_length": 2832,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934954.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2318T>G",
"hgvs_p": "p.Leu773Arg",
"transcript": "ENST00000934957.1",
"protein_id": "ENSP00000605016.1",
"transcript_support_level": null,
"aa_start": 773,
"aa_end": null,
"aa_length": 777,
"cds_start": 2318,
"cds_end": null,
"cds_length": 2334,
"cdna_start": 2334,
"cdna_end": null,
"cdna_length": 2823,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934957.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2318T>G",
"hgvs_p": "p.Leu773Arg",
"transcript": "ENST00000968816.1",
"protein_id": "ENSP00000638875.1",
"transcript_support_level": null,
"aa_start": 773,
"aa_end": null,
"aa_length": 777,
"cds_start": 2318,
"cds_end": null,
"cds_length": 2334,
"cdna_start": 2329,
"cdna_end": null,
"cdna_length": 2835,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968816.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2315T>G",
"hgvs_p": "p.Leu772Arg",
"transcript": "ENST00000934949.1",
"protein_id": "ENSP00000605008.1",
"transcript_support_level": null,
"aa_start": 772,
"aa_end": null,
"aa_length": 776,
"cds_start": 2315,
"cds_end": null,
"cds_length": 2331,
"cdna_start": 2338,
"cdna_end": null,
"cdna_length": 2831,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934949.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2309T>G",
"hgvs_p": "p.Leu770Arg",
"transcript": "ENST00000870729.1",
"protein_id": "ENSP00000540788.1",
"transcript_support_level": null,
"aa_start": 770,
"aa_end": null,
"aa_length": 774,
"cds_start": 2309,
"cds_end": null,
"cds_length": 2325,
"cdna_start": 2346,
"cdna_end": null,
"cdna_length": 2853,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000870729.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2306T>G",
"hgvs_p": "p.Leu769Arg",
"transcript": "ENST00000968806.1",
"protein_id": "ENSP00000638865.1",
"transcript_support_level": null,
"aa_start": 769,
"aa_end": null,
"aa_length": 773,
"cds_start": 2306,
"cds_end": null,
"cds_length": 2322,
"cdna_start": 2343,
"cdna_end": null,
"cdna_length": 2849,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968806.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2303T>G",
"hgvs_p": "p.Leu768Arg",
"transcript": "ENST00000870734.1",
"protein_id": "ENSP00000540793.1",
"transcript_support_level": null,
"aa_start": 768,
"aa_end": null,
"aa_length": 772,
"cds_start": 2303,
"cds_end": null,
"cds_length": 2319,
"cdna_start": 2319,
"cdna_end": null,
"cdna_length": 2824,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000870734.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2303T>G",
"hgvs_p": "p.Leu768Arg",
"transcript": "ENST00000968822.1",
"protein_id": "ENSP00000638881.1",
"transcript_support_level": null,
"aa_start": 768,
"aa_end": null,
"aa_length": 772,
"cds_start": 2303,
"cds_end": null,
"cds_length": 2319,
"cdna_start": 2314,
"cdna_end": null,
"cdna_length": 2810,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968822.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2300T>G",
"hgvs_p": "p.Leu767Arg",
"transcript": "ENST00000968812.1",
"protein_id": "ENSP00000638871.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 771,
"cds_start": 2300,
"cds_end": null,
"cds_length": 2316,
"cdna_start": 2336,
"cdna_end": null,
"cdna_length": 2828,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968812.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2300T>G",
"hgvs_p": "p.Leu767Arg",
"transcript": "ENST00000968821.1",
"protein_id": "ENSP00000638880.1",
"transcript_support_level": null,
"aa_start": 767,
"aa_end": null,
"aa_length": 771,
"cds_start": 2300,
"cds_end": null,
"cds_length": 2316,
"cdna_start": 2311,
"cdna_end": null,
"cdna_length": 2808,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968821.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2294T>G",
"hgvs_p": "p.Leu765Arg",
"transcript": "ENST00000870726.1",
"protein_id": "ENSP00000540785.1",
"transcript_support_level": null,
"aa_start": 765,
"aa_end": null,
"aa_length": 769,
"cds_start": 2294,
"cds_end": null,
"cds_length": 2310,
"cdna_start": 2354,
"cdna_end": null,
"cdna_length": 2861,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000870726.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2291T>G",
"hgvs_p": "p.Leu764Arg",
"transcript": "ENST00000934958.1",
"protein_id": "ENSP00000605017.1",
"transcript_support_level": null,
"aa_start": 764,
"aa_end": null,
"aa_length": 768,
"cds_start": 2291,
"cds_end": null,
"cds_length": 2307,
"cdna_start": 2302,
"cdna_end": null,
"cdna_length": 2794,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934958.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2288T>G",
"hgvs_p": "p.Leu763Arg",
"transcript": "ENST00000934941.1",
"protein_id": "ENSP00000605000.1",
"transcript_support_level": null,
"aa_start": 763,
"aa_end": null,
"aa_length": 767,
"cds_start": 2288,
"cds_end": null,
"cds_length": 2304,
"cdna_start": 2315,
"cdna_end": null,
"cdna_length": 2822,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934941.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2282T>G",
"hgvs_p": "p.Leu761Arg",
"transcript": "ENST00000870733.1",
"protein_id": "ENSP00000540792.1",
"transcript_support_level": null,
"aa_start": 761,
"aa_end": null,
"aa_length": 765,
"cds_start": 2282,
"cds_end": null,
"cds_length": 2298,
"cdna_start": 2304,
"cdna_end": null,
"cdna_length": 2809,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000870733.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2267T>G",
"hgvs_p": "p.Leu756Arg",
"transcript": "ENST00000934959.1",
"protein_id": "ENSP00000605018.1",
"transcript_support_level": null,
"aa_start": 756,
"aa_end": null,
"aa_length": 760,
"cds_start": 2267,
"cds_end": null,
"cds_length": 2283,
"cdna_start": 2277,
"cdna_end": null,
"cdna_length": 2767,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000934959.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2261T>G",
"hgvs_p": "p.Leu754Arg",
"transcript": "ENST00000968820.1",
"protein_id": "ENSP00000638879.1",
"transcript_support_level": null,
"aa_start": 754,
"aa_end": null,
"aa_length": 758,
"cds_start": 2261,
"cds_end": null,
"cds_length": 2277,
"cdna_start": 2272,
"cdna_end": null,
"cdna_length": 2769,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968820.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2255T>G",
"hgvs_p": "p.Leu752Arg",
"transcript": "ENST00000870738.1",
"protein_id": "ENSP00000540797.1",
"transcript_support_level": null,
"aa_start": 752,
"aa_end": null,
"aa_length": 756,
"cds_start": 2255,
"cds_end": null,
"cds_length": 2271,
"cdna_start": 2271,
"cdna_end": null,
"cdna_length": 2768,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000870738.1"
},
{
"aa_ref": "L",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NOC2L",
"gene_hgnc_id": 24517,
"hgvs_c": "c.2255T>G",
"hgvs_p": "p.Leu752Arg",
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],
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"computational_prediction_selected": "Uncertain_significance",
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"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
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"revel_prediction": "Benign",
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"alphamissense_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.33,
"bayesdelnoaf_prediction": "Benign",
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"phylop100way_prediction": "Benign",
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{
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],
"verdict": "Likely_benign",
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"effects": [
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{
"score": 2,
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"criteria": [
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],
"verdict": "Uncertain_significance",
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],
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}