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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 1-9717608-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=9717608&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "1",
"pos": 9717608,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "ENST00000377346.9",
"consequences": [
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "NM_005026.5",
"protein_id": "NP_005017.3",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1211,
"cdna_end": null,
"cdna_length": 5412,
"mane_select": "ENST00000377346.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000377346.9",
"protein_id": "ENSP00000366563.4",
"transcript_support_level": 1,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1211,
"cdna_end": null,
"cdna_length": 5412,
"mane_select": "NM_005026.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.897C>T",
"hgvs_p": "p.Asn299Asn",
"transcript": "ENST00000361110.6",
"protein_id": "ENSP00000354410.2",
"transcript_support_level": 1,
"aa_start": 299,
"aa_end": null,
"aa_length": 1068,
"cds_start": 897,
"cds_end": null,
"cds_length": 3207,
"cdna_start": 1012,
"cdna_end": null,
"cdna_length": 3508,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "NM_001437546.1",
"protein_id": "NP_001424475.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1106,
"cdna_end": null,
"cdna_length": 5307,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698712.1",
"protein_id": "ENSP00000513889.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1068,
"cdna_end": null,
"cdna_length": 5061,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698713.1",
"protein_id": "ENSP00000513890.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1314,
"cdna_end": null,
"cdna_length": 5307,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "NM_001350234.2",
"protein_id": "NP_001337163.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1043,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3132,
"cdna_start": 1317,
"cdna_end": null,
"cdna_length": 5515,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "NM_001439206.1",
"protein_id": "NP_001426135.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1043,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3132,
"cdna_start": 1211,
"cdna_end": null,
"cdna_length": 5409,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698710.1",
"protein_id": "ENSP00000513888.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1043,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3132,
"cdna_start": 1194,
"cdna_end": null,
"cdna_length": 5184,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698715.1",
"protein_id": "ENSP00000513892.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1043,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3132,
"cdna_start": 1291,
"cdna_end": null,
"cdna_length": 5281,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698716.1",
"protein_id": "ENSP00000513893.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1040,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3123,
"cdna_start": 1123,
"cdna_end": null,
"cdna_length": 3804,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.915C>T",
"hgvs_p": "p.Asn305Asn",
"transcript": "NM_001350235.1",
"protein_id": "NP_001337164.1",
"transcript_support_level": null,
"aa_start": 305,
"aa_end": null,
"aa_length": 1015,
"cds_start": 915,
"cds_end": null,
"cds_length": 3048,
"cdna_start": 1052,
"cdna_end": null,
"cdna_length": 5064,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698709.1",
"protein_id": "ENSP00000513887.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1012,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3039,
"cdna_start": 1198,
"cdna_end": null,
"cdna_length": 5095,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "NM_001437547.1",
"protein_id": "NP_001424476.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 996,
"cds_start": 1002,
"cds_end": null,
"cds_length": 2991,
"cdna_start": 1211,
"cdna_end": null,
"cdna_length": 5268,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "NM_001438338.1",
"protein_id": "NP_001425267.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 996,
"cds_start": 1002,
"cds_end": null,
"cds_length": 2991,
"cdna_start": 1317,
"cdna_end": null,
"cdna_length": 5374,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "ENST00000698714.1",
"protein_id": "ENSP00000513891.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 996,
"cds_start": 1002,
"cds_end": null,
"cds_length": 2991,
"cdna_start": 1308,
"cdna_end": null,
"cdna_length": 5157,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "XM_006710687.3",
"protein_id": "XP_006710750.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1317,
"cdna_end": null,
"cdna_length": 5518,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "XM_047422550.1",
"protein_id": "XP_047278506.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1820,
"cdna_end": null,
"cdna_length": 6021,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "XM_047422551.1",
"protein_id": "XP_047278507.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
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"cds_length": 3135,
"cdna_start": 1391,
"cdna_end": null,
"cdna_length": 5592,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "XM_047422552.1",
"protein_id": "XP_047278508.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1374,
"cdna_end": null,
"cdna_length": 5575,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "XM_047422553.1",
"protein_id": "XP_047278509.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1309,
"cdna_end": null,
"cdna_length": 5510,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn",
"transcript": "XM_047422554.1",
"protein_id": "XP_047278510.1",
"transcript_support_level": null,
"aa_start": 334,
"aa_end": null,
"aa_length": 1044,
"cds_start": 1002,
"cds_end": null,
"cds_length": 3135,
"cdna_start": 1387,
"cdna_end": null,
"cdna_length": 5588,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "N",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
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{
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},
{
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{
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{
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},
{
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"gene_symbol": "PIK3CD",
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}
],
"gene_symbol": "PIK3CD",
"gene_hgnc_id": 8977,
"dbsnp": "rs28730670",
"frequency_reference_population": 0.0010216448,
"hom_count_reference_population": 18,
"allele_count_reference_population": 1649,
"gnomad_exomes_af": 0.000628705,
"gnomad_genomes_af": 0.00479223,
"gnomad_exomes_ac": 919,
"gnomad_genomes_ac": 730,
"gnomad_exomes_homalt": 6,
"gnomad_genomes_homalt": 12,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.4699999988079071,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.47,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.927,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -21,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
"acmg_by_gene": [
{
"score": -21,
"benign_score": 21,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "ENST00000377346.9",
"gene_symbol": "PIK3CD",
"hgnc_id": 8977,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD,AR,Unknown",
"hgvs_c": "c.1002C>T",
"hgvs_p": "p.Asn334Asn"
}
],
"clinvar_disease": "Immunodeficiency 14,not provided",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "B:3",
"phenotype_combined": "Immunodeficiency 14|not provided",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}