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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 1-9733535-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=1&pos=9733535&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "1",
      "pos": 9733535,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001009566.3",
      "consequences": [
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2293A>G",
          "hgvs_p": "p.Met765Val",
          "transcript": "NM_001009566.3",
          "protein_id": "NP_001009566.1",
          "transcript_support_level": null,
          "aa_start": 765,
          "aa_end": null,
          "aa_length": 981,
          "cds_start": 2293,
          "cds_end": null,
          "cds_length": 2946,
          "cdna_start": 2525,
          "cdna_end": null,
          "cdna_length": 4760,
          "mane_select": "ENST00000377298.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001009566.3"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2293A>G",
          "hgvs_p": "p.Met765Val",
          "transcript": "ENST00000377298.9",
          "protein_id": "ENSP00000366513.4",
          "transcript_support_level": 1,
          "aa_start": 765,
          "aa_end": null,
          "aa_length": 981,
          "cds_start": 2293,
          "cds_end": null,
          "cds_length": 2946,
          "cdna_start": 2525,
          "cdna_end": null,
          "cdna_length": 4760,
          "mane_select": "NM_001009566.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000377298.9"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2263A>G",
          "hgvs_p": "p.Met755Val",
          "transcript": "ENST00000361311.4",
          "protein_id": "ENSP00000354997.4",
          "transcript_support_level": 1,
          "aa_start": 755,
          "aa_end": null,
          "aa_length": 971,
          "cds_start": 2263,
          "cds_end": null,
          "cds_length": 2916,
          "cdna_start": 2514,
          "cdna_end": null,
          "cdna_length": 4647,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000361311.4"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2299A>G",
          "hgvs_p": "p.Met767Val",
          "transcript": "ENST00000872287.1",
          "protein_id": "ENSP00000542346.1",
          "transcript_support_level": null,
          "aa_start": 767,
          "aa_end": null,
          "aa_length": 983,
          "cds_start": 2299,
          "cds_end": null,
          "cds_length": 2952,
          "cdna_start": 2525,
          "cdna_end": null,
          "cdna_length": 4660,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872287.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2293A>G",
          "hgvs_p": "p.Met765Val",
          "transcript": "ENST00000872285.1",
          "protein_id": "ENSP00000542344.1",
          "transcript_support_level": null,
          "aa_start": 765,
          "aa_end": null,
          "aa_length": 981,
          "cds_start": 2293,
          "cds_end": null,
          "cds_length": 2946,
          "cdna_start": 2550,
          "cdna_end": null,
          "cdna_length": 4682,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872285.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2263A>G",
          "hgvs_p": "p.Met755Val",
          "transcript": "NM_014944.4",
          "protein_id": "NP_055759.3",
          "transcript_support_level": null,
          "aa_start": 755,
          "aa_end": null,
          "aa_length": 971,
          "cds_start": 2263,
          "cds_end": null,
          "cds_length": 2916,
          "cdna_start": 3056,
          "cdna_end": null,
          "cdna_length": 5196,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_014944.4"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2263A>G",
          "hgvs_p": "p.Met755Val",
          "transcript": "ENST00000932459.1",
          "protein_id": "ENSP00000602518.1",
          "transcript_support_level": null,
          "aa_start": 755,
          "aa_end": null,
          "aa_length": 971,
          "cds_start": 2263,
          "cds_end": null,
          "cds_length": 2916,
          "cdna_start": 2495,
          "cdna_end": null,
          "cdna_length": 4635,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932459.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2260A>G",
          "hgvs_p": "p.Met754Val",
          "transcript": "ENST00000960690.1",
          "protein_id": "ENSP00000630749.1",
          "transcript_support_level": null,
          "aa_start": 754,
          "aa_end": null,
          "aa_length": 970,
          "cds_start": 2260,
          "cds_end": null,
          "cds_length": 2913,
          "cdna_start": 2446,
          "cdna_end": null,
          "cdna_length": 4585,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960690.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2257A>G",
          "hgvs_p": "p.Met753Val",
          "transcript": "ENST00000872284.1",
          "protein_id": "ENSP00000542343.1",
          "transcript_support_level": null,
          "aa_start": 753,
          "aa_end": null,
          "aa_length": 969,
          "cds_start": 2257,
          "cds_end": null,
          "cds_length": 2910,
          "cdna_start": 2514,
          "cdna_end": null,
          "cdna_length": 4660,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872284.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2257A>G",
          "hgvs_p": "p.Met753Val",
          "transcript": "ENST00000960689.1",
          "protein_id": "ENSP00000630748.1",
          "transcript_support_level": null,
          "aa_start": 753,
          "aa_end": null,
          "aa_length": 969,
          "cds_start": 2257,
          "cds_end": null,
          "cds_length": 2910,
          "cdna_start": 2471,
          "cdna_end": null,
          "cdna_length": 4605,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960689.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2239A>G",
          "hgvs_p": "p.Met747Val",
          "transcript": "ENST00000872288.1",
          "protein_id": "ENSP00000542347.1",
          "transcript_support_level": null,
          "aa_start": 747,
          "aa_end": null,
          "aa_length": 963,
          "cds_start": 2239,
          "cds_end": null,
          "cds_length": 2892,
          "cdna_start": 2499,
          "cdna_end": null,
          "cdna_length": 3690,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872288.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2236A>G",
          "hgvs_p": "p.Met746Val",
          "transcript": "NM_001302883.1",
          "protein_id": "NP_001289812.1",
          "transcript_support_level": null,
          "aa_start": 746,
          "aa_end": null,
          "aa_length": 962,
          "cds_start": 2236,
          "cds_end": null,
          "cds_length": 2889,
          "cdna_start": 3029,
          "cdna_end": null,
          "cdna_length": 5169,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001302883.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2221A>G",
          "hgvs_p": "p.Met741Val",
          "transcript": "ENST00000932463.1",
          "protein_id": "ENSP00000602522.1",
          "transcript_support_level": null,
          "aa_start": 741,
          "aa_end": null,
          "aa_length": 957,
          "cds_start": 2221,
          "cds_end": null,
          "cds_length": 2874,
          "cdna_start": 2421,
          "cdna_end": null,
          "cdna_length": 4556,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932463.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2140A>G",
          "hgvs_p": "p.Met714Val",
          "transcript": "ENST00000932460.1",
          "protein_id": "ENSP00000602519.1",
          "transcript_support_level": null,
          "aa_start": 714,
          "aa_end": null,
          "aa_length": 930,
          "cds_start": 2140,
          "cds_end": null,
          "cds_length": 2793,
          "cdna_start": 2362,
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          "cdna_length": 4495,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000932460.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2131A>G",
          "hgvs_p": "p.Met711Val",
          "transcript": "ENST00000932462.1",
          "protein_id": "ENSP00000602521.1",
          "transcript_support_level": null,
          "aa_start": 711,
          "aa_end": null,
          "aa_length": 927,
          "cds_start": 2131,
          "cds_end": null,
          "cds_length": 2784,
          "cdna_start": 2330,
          "cdna_end": null,
          "cdna_length": 4467,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932462.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2044A>G",
          "hgvs_p": "p.Met682Val",
          "transcript": "ENST00000960691.1",
          "protein_id": "ENSP00000630750.1",
          "transcript_support_level": null,
          "aa_start": 682,
          "aa_end": null,
          "aa_length": 898,
          "cds_start": 2044,
          "cds_end": null,
          "cds_length": 2697,
          "cdna_start": 2258,
          "cdna_end": null,
          "cdna_length": 3439,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000960691.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.2014A>G",
          "hgvs_p": "p.Met672Val",
          "transcript": "ENST00000932458.1",
          "protein_id": "ENSP00000602517.1",
          "transcript_support_level": null,
          "aa_start": 672,
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          "cds_start": 2014,
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          "cds_length": 2667,
          "cdna_start": 2258,
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          "cdna_length": 4398,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000932458.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.1927A>G",
          "hgvs_p": "p.Met643Val",
          "transcript": "ENST00000872286.1",
          "protein_id": "ENSP00000542345.1",
          "transcript_support_level": null,
          "aa_start": 643,
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          "aa_length": 859,
          "cds_start": 1927,
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          "cds_length": 2580,
          "cdna_start": 2159,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000872286.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.1801A>G",
          "hgvs_p": "p.Met601Val",
          "transcript": "ENST00000932461.1",
          "protein_id": "ENSP00000602520.1",
          "transcript_support_level": null,
          "aa_start": 601,
          "aa_end": null,
          "aa_length": 817,
          "cds_start": 1801,
          "cds_end": null,
          "cds_length": 2454,
          "cdna_start": 2015,
          "cdna_end": null,
          "cdna_length": 4146,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932461.1"
        },
        {
          "aa_ref": "M",
          "aa_alt": "V",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLSTN1",
          "gene_hgnc_id": 17447,
          "hgvs_c": "c.1696A>G",
          "hgvs_p": "p.Met566Val",
          "transcript": "ENST00000435891.5",
          "protein_id": "ENSP00000401934.1",
          "transcript_support_level": 2,
          "aa_start": 566,
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        {
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        {
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          "biotype": "pseudogene",
          "feature": "ENST00000477264.1"
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      ],
      "gene_symbol": "CLSTN1",
      "gene_hgnc_id": 17447,
      "dbsnp": "rs1650519105",
      "frequency_reference_population": 6.84104e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": 6.84104e-7,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 1,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.3038524389266968,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.17,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1209,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.14,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.083,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
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      "acmg_score": 1,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_by_gene": [
        {
          "score": 1,
          "benign_score": 1,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001009566.3",
          "gene_symbol": "CLSTN1",
          "hgnc_id": 17447,
          "effects": [
            "missense_variant"
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          "hgvs_c": "c.2293A>G",
          "hgvs_p": "p.Met765Val"
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.