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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-101521685-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=101521685&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 101521685,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_033637.4",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.371G>A",
          "hgvs_p": "p.Arg124Gln",
          "transcript": "NM_033637.4",
          "protein_id": "NP_378663.1",
          "transcript_support_level": null,
          "aa_start": 124,
          "aa_end": null,
          "aa_length": 605,
          "cds_start": 371,
          "cds_end": null,
          "cds_length": 1818,
          "cdna_start": 387,
          "cdna_end": null,
          "cdna_length": 6024,
          "mane_select": "ENST00000370187.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_033637.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.371G>A",
          "hgvs_p": "p.Arg124Gln",
          "transcript": "ENST00000370187.8",
          "protein_id": "ENSP00000359206.3",
          "transcript_support_level": 1,
          "aa_start": 124,
          "aa_end": null,
          "aa_length": 605,
          "cds_start": 371,
          "cds_end": null,
          "cds_length": 1818,
          "cdna_start": 387,
          "cdna_end": null,
          "cdna_length": 6024,
          "mane_select": "NM_033637.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000370187.8"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.293G>A",
          "hgvs_p": "p.Arg98Gln",
          "transcript": "ENST00000393441.8",
          "protein_id": "ENSP00000377088.5",
          "transcript_support_level": 1,
          "aa_start": 98,
          "aa_end": null,
          "aa_length": 579,
          "cds_start": 293,
          "cds_end": null,
          "cds_length": 1740,
          "cdna_start": 441,
          "cdna_end": null,
          "cdna_length": 6084,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000393441.8"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.263G>A",
          "hgvs_p": "p.Arg88Gln",
          "transcript": "ENST00000408038.6",
          "protein_id": "ENSP00000385339.2",
          "transcript_support_level": 1,
          "aa_start": 88,
          "aa_end": null,
          "aa_length": 569,
          "cds_start": 263,
          "cds_end": null,
          "cds_length": 1710,
          "cdna_start": 337,
          "cdna_end": null,
          "cdna_length": 5982,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000408038.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.464G>A",
          "hgvs_p": "p.Arg155Gln",
          "transcript": "ENST00000861880.1",
          "protein_id": "ENSP00000531939.1",
          "transcript_support_level": null,
          "aa_start": 155,
          "aa_end": null,
          "aa_length": 636,
          "cds_start": 464,
          "cds_end": null,
          "cds_length": 1911,
          "cdna_start": 576,
          "cdna_end": null,
          "cdna_length": 6201,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861880.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.434G>A",
          "hgvs_p": "p.Arg145Gln",
          "transcript": "ENST00000953682.1",
          "protein_id": "ENSP00000623741.1",
          "transcript_support_level": null,
          "aa_start": 145,
          "aa_end": null,
          "aa_length": 626,
          "cds_start": 434,
          "cds_end": null,
          "cds_length": 1881,
          "cdna_start": 483,
          "cdna_end": null,
          "cdna_length": 3023,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000953682.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.386G>A",
          "hgvs_p": "p.Arg129Gln",
          "transcript": "ENST00000861881.1",
          "protein_id": "ENSP00000531940.1",
          "transcript_support_level": null,
          "aa_start": 129,
          "aa_end": null,
          "aa_length": 610,
          "cds_start": 386,
          "cds_end": null,
          "cds_length": 1833,
          "cdna_start": 454,
          "cdna_end": null,
          "cdna_length": 6091,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861881.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.356G>A",
          "hgvs_p": "p.Arg119Gln",
          "transcript": "ENST00000861879.1",
          "protein_id": "ENSP00000531938.1",
          "transcript_support_level": null,
          "aa_start": 119,
          "aa_end": null,
          "aa_length": 600,
          "cds_start": 356,
          "cds_end": null,
          "cds_length": 1803,
          "cdna_start": 494,
          "cdna_end": null,
          "cdna_length": 6102,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861879.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.293G>A",
          "hgvs_p": "p.Arg98Gln",
          "transcript": "NM_001256856.2",
          "protein_id": "NP_001243785.1",
          "transcript_support_level": null,
          "aa_start": 98,
          "aa_end": null,
          "aa_length": 579,
          "cds_start": 293,
          "cds_end": null,
          "cds_length": 1740,
          "cdna_start": 309,
          "cdna_end": null,
          "cdna_length": 5946,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001256856.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.281G>A",
          "hgvs_p": "p.Arg94Gln",
          "transcript": "ENST00000861883.1",
          "protein_id": "ENSP00000531942.1",
          "transcript_support_level": null,
          "aa_start": 94,
          "aa_end": null,
          "aa_length": 575,
          "cds_start": 281,
          "cds_end": null,
          "cds_length": 1728,
          "cdna_start": 334,
          "cdna_end": null,
          "cdna_length": 2367,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861883.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.278G>A",
          "hgvs_p": "p.Arg93Gln",
          "transcript": "ENST00000924128.1",
          "protein_id": "ENSP00000594187.1",
          "transcript_support_level": null,
          "aa_start": 93,
          "aa_end": null,
          "aa_length": 574,
          "cds_start": 278,
          "cds_end": null,
          "cds_length": 1725,
          "cdna_start": 330,
          "cdna_end": null,
          "cdna_length": 2138,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000924128.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.263G>A",
          "hgvs_p": "p.Arg88Gln",
          "transcript": "NM_003939.5",
          "protein_id": "NP_003930.1",
          "transcript_support_level": null,
          "aa_start": 88,
          "aa_end": null,
          "aa_length": 569,
          "cds_start": 263,
          "cds_end": null,
          "cds_length": 1710,
          "cdna_start": 279,
          "cdna_end": null,
          "cdna_length": 5916,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_003939.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.185G>A",
          "hgvs_p": "p.Arg62Gln",
          "transcript": "ENST00000861882.1",
          "protein_id": "ENSP00000531941.1",
          "transcript_support_level": null,
          "aa_start": 62,
          "aa_end": null,
          "aa_length": 543,
          "cds_start": 185,
          "cds_end": null,
          "cds_length": 1632,
          "cdna_start": 302,
          "cdna_end": null,
          "cdna_length": 2850,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000861882.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.317G>A",
          "hgvs_p": "p.Arg106Gln",
          "transcript": "ENST00000370183.2",
          "protein_id": "ENSP00000359202.2",
          "transcript_support_level": 3,
          "aa_start": 106,
          "aa_end": null,
          "aa_length": 190,
          "cds_start": 317,
          "cds_end": null,
          "cds_length": 573,
          "cdna_start": 399,
          "cdna_end": null,
          "cdna_length": 655,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000370183.2"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
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          "exon_count": 15,
          "intron_rank": null,
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          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.752G>A",
          "hgvs_p": "p.Arg251Gln",
          "transcript": "XM_006718054.3",
          "protein_id": "XP_006718117.1",
          "transcript_support_level": null,
          "aa_start": 251,
          "aa_end": null,
          "aa_length": 732,
          "cds_start": 752,
          "cds_end": null,
          "cds_length": 2199,
          "cdna_start": 768,
          "cdna_end": null,
          "cdna_length": 6405,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_006718054.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.674G>A",
          "hgvs_p": "p.Arg225Gln",
          "transcript": "XM_017016870.2",
          "protein_id": "XP_016872359.1",
          "transcript_support_level": null,
          "aa_start": 225,
          "aa_end": null,
          "aa_length": 706,
          "cds_start": 674,
          "cds_end": null,
          "cds_length": 2121,
          "cdna_start": 690,
          "cdna_end": null,
          "cdna_length": 6327,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017016870.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.317G>A",
          "hgvs_p": "p.Arg106Gln",
          "transcript": "XM_017016871.2",
          "protein_id": "XP_016872360.1",
          "transcript_support_level": null,
          "aa_start": 106,
          "aa_end": null,
          "aa_length": 587,
          "cds_start": 317,
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          "cdna_start": 410,
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          "cdna_length": 6047,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017016871.2"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.317G>A",
          "hgvs_p": "p.Arg106Gln",
          "transcript": "XM_017016873.3",
          "protein_id": "XP_016872362.1",
          "transcript_support_level": null,
          "aa_start": 106,
          "aa_end": null,
          "aa_length": 587,
          "cds_start": 317,
          "cds_end": null,
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          "cdna_start": 438,
          "cdna_end": null,
          "cdna_length": 6075,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017016873.3"
        },
        {
          "aa_ref": "R",
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          "strand": true,
          "consequences": [
            "missense_variant"
          ],
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          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.239G>A",
          "hgvs_p": "p.Arg80Gln",
          "transcript": "XM_047425983.1",
          "protein_id": "XP_047281939.1",
          "transcript_support_level": null,
          "aa_start": 80,
          "aa_end": null,
          "aa_length": 561,
          "cds_start": 239,
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          "cds_length": 1686,
          "cdna_start": 332,
          "cdna_end": null,
          "cdna_length": 5969,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047425983.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BTRC",
          "gene_hgnc_id": 1144,
          "hgvs_c": "c.239G>A",
          "hgvs_p": "p.Arg80Gln",
          "transcript": "XM_047425984.1",
          "protein_id": "XP_047281940.1",
          "transcript_support_level": null,
          "aa_start": 80,
          "aa_end": null,
          "aa_length": 561,
          "cds_start": 239,
          "cds_end": null,
          "cds_length": 1686,
          "cdna_start": 354,
          "cdna_end": null,
          "cdna_length": 5991,
          "mane_select": null,
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      "computational_score_selected": 0.3310773968696594,
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      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.11,
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          "verdict": "Likely_benign",
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      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.