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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-102832611-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=102832611&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PM5",
            "PP2",
            "PP3",
            "PP5_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "CYP17A1",
          "hgnc_id": 2593,
          "hgvs_c": "c.1039C>G",
          "hgvs_p": "p.Arg347Gly",
          "inheritance_mode": "AR",
          "pathogenic_score": 8,
          "score": 8,
          "transcript": "NM_000102.4",
          "verdict": "Likely_pathogenic"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PP3",
            "PP5_Moderate"
          ],
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "gene_symbol": "WBP1L",
          "hgnc_id": 23510,
          "hgvs_c": "n.*1642G>C",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 5,
          "score": 5,
          "transcript": "ENST00000647664.1",
          "verdict": "Uncertain_significance"
        },
        {
          "benign_score": 0,
          "criteria": [
            "PM2",
            "PP3",
            "PP5_Moderate"
          ],
          "effects": [
            "upstream_gene_variant"
          ],
          "gene_symbol": "CYP17A1-AS1",
          "hgnc_id": 31671,
          "hgvs_c": "n.-65G>C",
          "hgvs_p": null,
          "inheritance_mode": "",
          "pathogenic_score": 5,
          "score": 5,
          "transcript": "XR_428804.2",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM2,PM5,PP2,PP3,PP5_Moderate",
      "acmg_score": 8,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.7691,
      "alt": "C",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.2,
      "chr": "10",
      "clinvar_classification": "Likely pathogenic",
      "clinvar_disease": "not provided",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LP:1",
      "computational_prediction_selected": "Pathogenic",
      "computational_score_selected": 0.9908830523490906,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 508,
          "aa_ref": "R",
          "aa_start": 347,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1750,
          "cdna_start": 1091,
          "cds_end": null,
          "cds_length": 1527,
          "cds_start": 1039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "NM_000102.4",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1039C>G",
          "hgvs_p": "p.Arg347Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000369887.4",
          "protein_coding": true,
          "protein_id": "NP_000093.1",
          "strand": false,
          "transcript": "NM_000102.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 508,
          "aa_ref": "R",
          "aa_start": 347,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 1750,
          "cdna_start": 1091,
          "cds_end": null,
          "cds_length": 1527,
          "cds_start": 1039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000369887.4",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1039C>G",
          "hgvs_p": "p.Arg347Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_000102.4",
          "protein_coding": true,
          "protein_id": "ENSP00000358903.3",
          "strand": false,
          "transcript": "ENST00000369887.4",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 517,
          "aa_ref": "R",
          "aa_start": 356,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1850,
          "cdna_start": 1121,
          "cds_end": null,
          "cds_length": 1554,
          "cds_start": 1066,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960108.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1066C>G",
          "hgvs_p": "p.Arg356Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630166.1",
          "strand": false,
          "transcript": "ENST00000960108.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 517,
          "aa_ref": "R",
          "aa_start": 356,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1770,
          "cdna_start": 1118,
          "cds_end": null,
          "cds_length": 1554,
          "cds_start": 1066,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960123.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1066C>G",
          "hgvs_p": "p.Arg356Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630182.1",
          "strand": false,
          "transcript": "ENST00000960123.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 509,
          "aa_ref": "R",
          "aa_start": 347,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1684,
          "cdna_start": 1100,
          "cds_end": null,
          "cds_length": 1530,
          "cds_start": 1039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000639393.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1039C>G",
          "hgvs_p": "p.Arg347Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000492651.1",
          "strand": false,
          "transcript": "ENST00000639393.1",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 507,
          "aa_ref": "R",
          "aa_start": 346,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1904,
          "cdna_start": 1176,
          "cds_end": null,
          "cds_length": 1524,
          "cds_start": 1036,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960106.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1036C>G",
          "hgvs_p": "p.Arg346Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630165.1",
          "strand": false,
          "transcript": "ENST00000960106.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 506,
          "aa_ref": "R",
          "aa_start": 345,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1747,
          "cdna_start": 1088,
          "cds_end": null,
          "cds_length": 1521,
          "cds_start": 1033,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960110.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1033C>G",
          "hgvs_p": "p.Arg345Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630168.1",
          "strand": false,
          "transcript": "ENST00000960110.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 497,
          "aa_ref": "R",
          "aa_start": 336,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1716,
          "cdna_start": 1059,
          "cds_end": null,
          "cds_length": 1494,
          "cds_start": 1006,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960117.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1006C>G",
          "hgvs_p": "p.Arg336Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630177.1",
          "strand": false,
          "transcript": "ENST00000960117.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 497,
          "aa_ref": "R",
          "aa_start": 336,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1715,
          "cdna_start": 1060,
          "cds_end": null,
          "cds_length": 1494,
          "cds_start": 1006,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960119.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1006C>G",
          "hgvs_p": "p.Arg336Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630178.1",
          "strand": false,
          "transcript": "ENST00000960119.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 486,
          "aa_ref": "R",
          "aa_start": 347,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1681,
          "cdna_start": 1094,
          "cds_end": null,
          "cds_length": 1461,
          "cds_start": 1039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960121.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1039C>G",
          "hgvs_p": "p.Arg347Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630180.1",
          "strand": false,
          "transcript": "ENST00000960121.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 485,
          "aa_ref": "R",
          "aa_start": 347,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1751,
          "cdna_start": 1094,
          "cds_end": null,
          "cds_length": 1458,
          "cds_start": 1039,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960109.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.1039C>G",
          "hgvs_p": "p.Arg347Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630167.1",
          "strand": false,
          "transcript": "ENST00000960109.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 485,
          "aa_ref": "R",
          "aa_start": 324,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1681,
          "cdna_start": 1025,
          "cds_end": null,
          "cds_length": 1458,
          "cds_start": 970,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000960114.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.970C>G",
          "hgvs_p": "p.Arg324Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630174.1",
          "strand": false,
          "transcript": "ENST00000960114.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 480,
          "aa_ref": "R",
          "aa_start": 318,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1667,
          "cdna_start": 1007,
          "cds_end": null,
          "cds_length": 1443,
          "cds_start": 952,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000960111.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.952C>G",
          "hgvs_p": "p.Arg318Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630170.1",
          "strand": false,
          "transcript": "ENST00000960111.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 479,
          "aa_ref": "R",
          "aa_start": 318,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1722,
          "cdna_start": 1063,
          "cds_end": null,
          "cds_length": 1440,
          "cds_start": 952,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000638971.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.952C>G",
          "hgvs_p": "p.Arg318Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000492313.1",
          "strand": false,
          "transcript": "ENST00000638971.1",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 456,
          "aa_ref": "R",
          "aa_start": 318,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1588,
          "cdna_start": 1003,
          "cds_end": null,
          "cds_length": 1371,
          "cds_start": 952,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000960122.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.952C>G",
          "hgvs_p": "p.Arg318Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630181.1",
          "strand": false,
          "transcript": "ENST00000960122.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 418,
          "aa_ref": "R",
          "aa_start": 257,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1477,
          "cdna_start": 824,
          "cds_end": null,
          "cds_length": 1257,
          "cds_start": 769,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000960120.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.769C>G",
          "hgvs_p": "p.Arg257Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000630179.1",
          "strand": false,
          "transcript": "ENST00000960120.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 407,
          "aa_ref": "R",
          "aa_start": 246,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1506,
          "cdna_start": 847,
          "cds_end": null,
          "cds_length": 1224,
          "cds_start": 736,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000638190.1",
          "gene_hgnc_id": 2593,
          "gene_symbol": "CYP17A1",
          "hgvs_c": "c.736C>G",
          "hgvs_p": "p.Arg246Gly",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000492539.1",
          "strand": false,
          "transcript": "ENST00000638190.1",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "G",
          "aa_end": null,
          "aa_length": 357,
          "aa_ref": "R",
          "aa_start": 195,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1298,
          "cdna_start": 638,
          "cds_end": null,
          "cds_length": 1074,
          "cds_start": 583,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000960113.1",
          "gene_hgnc_id": 2593,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.