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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-104034711-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=104034711&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 3,
"criteria": [
"PM2",
"BP4_Moderate",
"BP7"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "COL17A1",
"hgnc_id": 2194,
"hgvs_c": "c.3676C>A",
"hgvs_p": "p.Arg1226Arg",
"inheritance_mode": "AR,AD",
"pathogenic_score": 2,
"score": -1,
"transcript": "NM_000494.4",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Moderate,BP7",
"acmg_score": -1,
"allele_count_reference_population": 1,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.44,
"chr": "10",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.4399999976158142,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1497,
"aa_ref": "R",
"aa_start": 1226,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5612,
"cdna_start": 3845,
"cds_end": null,
"cds_length": 4494,
"cds_start": 3676,
"consequences": [
"synonymous_variant"
],
"exon_count": 56,
"exon_rank": 51,
"exon_rank_end": null,
"feature": "NM_000494.4",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3676C>A",
"hgvs_p": "p.Arg1226Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000648076.2",
"protein_coding": true,
"protein_id": "NP_000485.3",
"strand": false,
"transcript": "NM_000494.4",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1497,
"aa_ref": "R",
"aa_start": 1226,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5612,
"cdna_start": 3845,
"cds_end": null,
"cds_length": 4494,
"cds_start": 3676,
"consequences": [
"synonymous_variant"
],
"exon_count": 56,
"exon_rank": 51,
"exon_rank_end": null,
"feature": "ENST00000648076.2",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3676C>A",
"hgvs_p": "p.Arg1226Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_000494.4",
"protein_coding": true,
"protein_id": "ENSP00000497653.1",
"strand": false,
"transcript": "ENST00000648076.2",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1497,
"aa_ref": "R",
"aa_start": 1226,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5584,
"cdna_start": 3765,
"cds_end": null,
"cds_length": 4494,
"cds_start": 3676,
"consequences": [
"synonymous_variant"
],
"exon_count": 56,
"exon_rank": 51,
"exon_rank_end": null,
"feature": "ENST00000859462.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3676C>A",
"hgvs_p": "p.Arg1226Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529521.1",
"strand": false,
"transcript": "ENST00000859462.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1496,
"aa_ref": "R",
"aa_start": 1225,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5666,
"cdna_start": 3901,
"cds_end": null,
"cds_length": 4491,
"cds_start": 3673,
"consequences": [
"synonymous_variant"
],
"exon_count": 56,
"exon_rank": 51,
"exon_rank_end": null,
"feature": "ENST00000859464.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3673C>A",
"hgvs_p": "p.Arg1225Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529523.1",
"strand": false,
"transcript": "ENST00000859464.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1493,
"aa_ref": "R",
"aa_start": 1222,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5659,
"cdna_start": 3892,
"cds_end": null,
"cds_length": 4482,
"cds_start": 3664,
"consequences": [
"synonymous_variant"
],
"exon_count": 56,
"exon_rank": 51,
"exon_rank_end": null,
"feature": "ENST00000859463.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3664C>A",
"hgvs_p": "p.Arg1222Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529522.1",
"strand": false,
"transcript": "ENST00000859463.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1492,
"aa_ref": "R",
"aa_start": 1221,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5642,
"cdna_start": 3881,
"cds_end": null,
"cds_length": 4479,
"cds_start": 3661,
"consequences": [
"synonymous_variant"
],
"exon_count": 56,
"exon_rank": 51,
"exon_rank_end": null,
"feature": "ENST00000859466.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3661C>A",
"hgvs_p": "p.Arg1221Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529525.1",
"strand": false,
"transcript": "ENST00000859466.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1486,
"aa_ref": "R",
"aa_start": 1215,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6163,
"cdna_start": 3863,
"cds_end": null,
"cds_length": 4461,
"cds_start": 3643,
"consequences": [
"synonymous_variant"
],
"exon_count": 55,
"exon_rank": 50,
"exon_rank_end": null,
"feature": "ENST00000859461.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3643C>A",
"hgvs_p": "p.Arg1215Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529520.1",
"strand": false,
"transcript": "ENST00000859461.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1485,
"aa_ref": "R",
"aa_start": 1214,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 6164,
"cdna_start": 3864,
"cds_end": null,
"cds_length": 4458,
"cds_start": 3640,
"consequences": [
"synonymous_variant"
],
"exon_count": 55,
"exon_rank": 50,
"exon_rank_end": null,
"feature": "ENST00000859460.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3640C>A",
"hgvs_p": "p.Arg1214Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529519.1",
"strand": false,
"transcript": "ENST00000859460.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1485,
"aa_ref": "R",
"aa_start": 1214,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5633,
"cdna_start": 3868,
"cds_end": null,
"cds_length": 4458,
"cds_start": 3640,
"consequences": [
"synonymous_variant"
],
"exon_count": 55,
"exon_rank": 50,
"exon_rank_end": null,
"feature": "ENST00000859465.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3640C>A",
"hgvs_p": "p.Arg1214Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000529524.1",
"strand": false,
"transcript": "ENST00000859465.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1447,
"aa_ref": "R",
"aa_start": 1176,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5281,
"cdna_start": 3737,
"cds_end": null,
"cds_length": 4344,
"cds_start": 3526,
"consequences": [
"synonymous_variant"
],
"exon_count": 54,
"exon_rank": 49,
"exon_rank_end": null,
"feature": "ENST00000961906.1",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3526C>A",
"hgvs_p": "p.Arg1176Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000631965.1",
"strand": false,
"transcript": "ENST00000961906.1",
"transcript_support_level": null
},
{
"aa_alt": "R",
"aa_end": null,
"aa_length": 1415,
"aa_ref": "R",
"aa_start": 1144,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5197,
"cdna_start": 3430,
"cds_end": null,
"cds_length": 4248,
"cds_start": 3430,
"consequences": [
"synonymous_variant"
],
"exon_count": 51,
"exon_rank": 46,
"exon_rank_end": null,
"feature": "ENST00000369733.8",
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"hgvs_c": "c.3430C>A",
"hgvs_p": "p.Arg1144Arg",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000358748.3",
"strand": false,
"transcript": "ENST00000369733.8",
"transcript_support_level": 5
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs121912769",
"effect": "synonymous_variant",
"frequency_reference_population": 6.8530045e-7,
"gene_hgnc_id": 2194,
"gene_symbol": "COL17A1",
"gnomad_exomes_ac": 1,
"gnomad_exomes_af": 6.853e-7,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_ac": null,
"gnomad_genomes_af": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 0,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": null,
"phenotype_combined": null,
"phylop100way_prediction": "Benign",
"phylop100way_score": 3.289,
"pos": 104034711,
"ref": "G",
"revel_prediction": null,
"revel_score": null,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0,
"transcript": "NM_000494.4"
}
]
}