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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-113597319-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=113597319&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 4,
"criteria": [
"PM2",
"BP4_Strong"
],
"effects": [
"intron_variant"
],
"gene_symbol": "NRAP",
"hgnc_id": 7988,
"hgvs_c": "c.4333-135C>A",
"hgvs_p": null,
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": -2,
"transcript": "NM_001261463.2",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_score": -2,
"allele_count_reference_population": 3,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.84,
"chr": "10",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": "Benign",
"computational_score_selected": -0.8399999737739563,
"computational_source_selected": "BayesDel_noAF",
"consequences": [
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1730,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5613,
"cdna_start": null,
"cds_end": null,
"cds_length": 5193,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 42,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_198060.4",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4333-135C>A",
"hgvs_p": null,
"intron_rank": 36,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000359988.4",
"protein_coding": true,
"protein_id": "NP_932326.2",
"strand": false,
"transcript": "NM_198060.4",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1730,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5613,
"cdna_start": null,
"cds_end": null,
"cds_length": 5193,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 42,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000359988.4",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4333-135C>A",
"hgvs_p": null,
"intron_rank": 36,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_198060.4",
"protein_coding": true,
"protein_id": "ENSP00000353078.3",
"strand": false,
"transcript": "ENST00000359988.4",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1731,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5534,
"cdna_start": null,
"cds_end": null,
"cds_length": 5196,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 42,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000369358.8",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4333-135C>A",
"hgvs_p": null,
"intron_rank": 36,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000358365.4",
"strand": false,
"transcript": "ENST00000369358.8",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1695,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5426,
"cdna_start": null,
"cds_end": null,
"cds_length": 5088,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000360478.7",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4228-135C>A",
"hgvs_p": null,
"intron_rank": 35,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000353666.3",
"strand": false,
"transcript": "ENST00000360478.7",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1731,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5500,
"cdna_start": null,
"cds_end": null,
"cds_length": 5196,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 42,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001261463.2",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4333-135C>A",
"hgvs_p": null,
"intron_rank": 36,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001248392.1",
"strand": false,
"transcript": "NM_001261463.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1703,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5535,
"cdna_start": null,
"cds_end": null,
"cds_length": 5112,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000369360.7",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4252-135C>A",
"hgvs_p": null,
"intron_rank": 35,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000358367.3",
"strand": false,
"transcript": "ENST00000369360.7",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1697,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5392,
"cdna_start": null,
"cds_end": null,
"cds_length": 5094,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000945588.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4234-135C>A",
"hgvs_p": null,
"intron_rank": 35,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000615647.1",
"strand": false,
"transcript": "ENST00000945588.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1696,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5527,
"cdna_start": null,
"cds_end": null,
"cds_length": 5091,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000883351.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4228-135C>A",
"hgvs_p": null,
"intron_rank": 35,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553410.1",
"strand": false,
"transcript": "ENST00000883351.1",
"transcript_support_level": null
},
{
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"aa_length": 1695,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5508,
"cdna_start": null,
"cds_end": null,
"cds_length": 5088,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_006175.5",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4228-135C>A",
"hgvs_p": null,
"intron_rank": 35,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_006166.3",
"strand": false,
"transcript": "NM_006175.5",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1695,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5392,
"cdna_start": null,
"cds_end": null,
"cds_length": 5088,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000883369.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4333-135C>A",
"hgvs_p": null,
"intron_rank": 36,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553428.1",
"strand": false,
"transcript": "ENST00000883369.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
"canonical": false,
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"cds_start": null,
"consequences": [
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],
"exon_count": 41,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000945556.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4228-135C>A",
"hgvs_p": null,
"intron_rank": 35,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000615615.1",
"strand": false,
"transcript": "ENST00000945556.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
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"cdna_start": null,
"cds_end": null,
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"consequences": [
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],
"exon_count": 41,
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"feature": "NM_001322945.2",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "NP_001309874.1",
"strand": false,
"transcript": "NM_001322945.2",
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},
{
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"consequences": [
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],
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"feature": "ENST00000945563.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
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"protein_coding": true,
"protein_id": "ENSP00000615622.1",
"strand": false,
"transcript": "ENST00000945563.1",
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},
{
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"biotype": "protein_coding",
"canonical": false,
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"cdna_start": null,
"cds_end": null,
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"cds_start": null,
"consequences": [
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],
"exon_count": 41,
"exon_rank": null,
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"feature": "ENST00000945565.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4225-135C>A",
"hgvs_p": null,
"intron_rank": 35,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000615624.1",
"strand": false,
"transcript": "ENST00000945565.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
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"consequences": [
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],
"exon_count": 41,
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"feature": "ENST00000945582.1",
"gene_hgnc_id": 7988,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000615641.1",
"strand": false,
"transcript": "ENST00000945582.1",
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},
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"biotype": "protein_coding",
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"cds_start": null,
"consequences": [
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],
"exon_count": 41,
"exon_rank": null,
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"feature": "ENST00000945579.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4219-135C>A",
"hgvs_p": null,
"intron_rank": 35,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000615638.1",
"strand": false,
"transcript": "ENST00000945579.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
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"cdna_start": null,
"cds_end": null,
"cds_length": 5079,
"cds_start": null,
"consequences": [
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],
"exon_count": 41,
"exon_rank": null,
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"feature": "ENST00000945573.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4219-135C>A",
"hgvs_p": null,
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"mane_plus": null,
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"protein_coding": true,
"protein_id": "ENSP00000615632.1",
"strand": false,
"transcript": "ENST00000945573.1",
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},
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"consequences": [
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],
"exon_count": 41,
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"feature": "ENST00000945586.1",
"gene_hgnc_id": 7988,
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"protein_coding": true,
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"transcript": "ENST00000945586.1",
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},
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],
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"feature": "ENST00000945554.1",
"gene_hgnc_id": 7988,
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"hgvs_c": "c.4129-135C>A",
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"protein_coding": true,
"protein_id": "ENSP00000615613.1",
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},
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"consequences": [
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],
"exon_count": 40,
"exon_rank": null,
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"feature": "ENST00000883355.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4228-135C>A",
"hgvs_p": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553414.1",
"strand": false,
"transcript": "ENST00000883355.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
"canonical": false,
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"cdna_start": null,
"cds_end": null,
"cds_length": 4986,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 40,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000883364.1",
"gene_hgnc_id": 7988,
"gene_symbol": "NRAP",
"hgvs_c": "c.4123-135C>A",
"hgvs_p": null,
"intron_rank": 34,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553423.1",
"strand": false,
"transcript": "ENST00000883364.1",
"transcript_support_level": null
},
{
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"biotype": "protein_coding",
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