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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-122092312-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=122092312&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 122092312,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000369005.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5573+3721C>G",
"hgvs_p": null,
"transcript": "NM_206862.4",
"protein_id": "NP_996744.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2948,
"cds_start": -4,
"cds_end": null,
"cds_length": 8847,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9704,
"mane_select": "ENST00000369005.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5573+3721C>G",
"hgvs_p": null,
"transcript": "ENST00000369005.6",
"protein_id": "ENSP00000358001.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2948,
"cds_start": -4,
"cds_end": null,
"cds_length": 8847,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9704,
"mane_select": "NM_206862.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5720+3574C>G",
"hgvs_p": null,
"transcript": "ENST00000515273.5",
"protein_id": "ENSP00000424467.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2875,
"cds_start": -4,
"cds_end": null,
"cds_length": 8628,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9245,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5573+3721C>G",
"hgvs_p": null,
"transcript": "ENST00000515603.5",
"protein_id": "ENSP00000427618.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 2826,
"cds_start": -4,
"cds_end": null,
"cds_length": 8481,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9101,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.147-40297C>G",
"hgvs_p": null,
"transcript": "ENST00000513429.5",
"protein_id": "ENSP00000425062.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1094,
"cds_start": -4,
"cds_end": null,
"cds_length": 3285,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4114,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5573+3721C>G",
"hgvs_p": null,
"transcript": "ENST00000334433.7",
"protein_id": "ENSP00000334280.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2948,
"cds_start": -4,
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"cds_length": 8847,
"cdna_start": null,
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"cdna_length": 9377,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5633+3721C>G",
"hgvs_p": null,
"transcript": "NM_001438364.1",
"protein_id": "NP_001425293.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5720+3574C>G",
"hgvs_p": null,
"transcript": "NM_001291877.2",
"protein_id": "NP_001278806.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2875,
"cds_start": -4,
"cds_end": null,
"cds_length": 8628,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 9485,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TACC2",
"gene_hgnc_id": 11523,
"hgvs_c": "c.5720+3574C>G",
"hgvs_p": null,
"transcript": "ENST00000453444.6",
"protein_id": "ENSP00000395048.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2875,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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},
{
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"consequences": [
"intron_variant"
],
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"exon_count": 21,
"intron_rank": 5,
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"gene_symbol": "TACC2",
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"hgvs_c": "c.5573+3721C>G",
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"transcript": "NM_001438365.1",
"protein_id": "NP_001425294.1",
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},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 5,
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"gene_symbol": "TACC2",
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"hgvs_c": "c.5573+3721C>G",
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],
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"gene_symbol": "TACC2",
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],
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"gene_symbol": "TACC2",
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],
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"gene_symbol": "TACC2",
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"hgvs_c": "c.5633+3721C>G",
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},
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],
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"gene_symbol": "TACC2",
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}