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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-125836728-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=125836728&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 125836728,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_018180.3",
      "consequences": [
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "NM_018180.3",
          "protein_id": "NP_060650.2",
          "transcript_support_level": null,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000284690.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_018180.3"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "ENST00000284690.4",
          "protein_id": "ENSP00000284690.3",
          "transcript_support_level": 1,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_018180.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000284690.4"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.1063G>A",
          "hgvs_p": "p.Glu355Lys",
          "transcript": "ENST00000368721.5",
          "protein_id": "ENSP00000357710.1",
          "transcript_support_level": 1,
          "aa_start": 355,
          "aa_end": null,
          "aa_length": 367,
          "cds_start": 1063,
          "cds_end": null,
          "cds_length": 1104,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000368721.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.774+2782C>T",
          "hgvs_p": null,
          "transcript": "ENST00000368759.5",
          "protein_id": "ENSP00000357748.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 322,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 969,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000368759.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.774+2782C>T",
          "hgvs_p": null,
          "transcript": "ENST00000299130.7",
          "protein_id": "ENSP00000299130.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 292,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 879,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000299130.7"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2338G>A",
          "hgvs_p": "p.Glu780Lys",
          "transcript": "ENST00000963220.1",
          "protein_id": "ENSP00000633279.1",
          "transcript_support_level": null,
          "aa_start": 780,
          "aa_end": null,
          "aa_length": 792,
          "cds_start": 2338,
          "cds_end": null,
          "cds_length": 2379,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000963220.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "ENST00000900795.1",
          "protein_id": "ENSP00000570854.1",
          "transcript_support_level": null,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000900795.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "ENST00000963219.1",
          "protein_id": "ENSP00000633278.1",
          "transcript_support_level": null,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000963219.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "ENST00000963221.1",
          "protein_id": "ENSP00000633280.1",
          "transcript_support_level": null,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000963221.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2185G>A",
          "hgvs_p": "p.Glu729Lys",
          "transcript": "ENST00000900796.1",
          "protein_id": "ENSP00000570855.1",
          "transcript_support_level": null,
          "aa_start": 729,
          "aa_end": null,
          "aa_length": 741,
          "cds_start": 2185,
          "cds_end": null,
          "cds_length": 2226,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000900796.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2338G>A",
          "hgvs_p": "p.Glu780Lys",
          "transcript": "XM_047425467.1",
          "protein_id": "XP_047281423.1",
          "transcript_support_level": null,
          "aa_start": 780,
          "aa_end": null,
          "aa_length": 792,
          "cds_start": 2338,
          "cds_end": null,
          "cds_length": 2379,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047425467.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2338G>A",
          "hgvs_p": "p.Glu780Lys",
          "transcript": "XM_047425468.1",
          "protein_id": "XP_047281424.1",
          "transcript_support_level": null,
          "aa_start": 780,
          "aa_end": null,
          "aa_length": 792,
          "cds_start": 2338,
          "cds_end": null,
          "cds_length": 2379,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047425468.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 13,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "XM_047425469.1",
          "protein_id": "XP_047281425.1",
          "transcript_support_level": null,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047425469.1"
        },
        {
          "aa_ref": "E",
          "aa_alt": "K",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DHX32",
          "gene_hgnc_id": 16717,
          "hgvs_c": "c.2191G>A",
          "hgvs_p": "p.Glu731Lys",
          "transcript": "XM_047425470.1",
          "protein_id": "XP_047281426.1",
          "transcript_support_level": null,
          "aa_start": 731,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": 2191,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047425470.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.*454C>T",
          "hgvs_p": null,
          "transcript": "ENST00000919011.1",
          "protein_id": "ENSP00000589070.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 311,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 936,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000919011.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.774+2782C>T",
          "hgvs_p": null,
          "transcript": "NM_016567.4",
          "protein_id": "NP_057651.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 322,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 969,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_016567.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.774+2782C>T",
          "hgvs_p": null,
          "transcript": "NM_078469.3",
          "protein_id": "NP_510869.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 292,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 879,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_078469.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.*454C>T",
          "hgvs_p": null,
          "transcript": "NM_078468.3",
          "protein_id": "NP_510868.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 314,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 945,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000278100.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_078468.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.*454C>T",
          "hgvs_p": null,
          "transcript": "ENST00000278100.11",
          "protein_id": "ENSP00000278100.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 314,
          "cds_start": null,
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          "cds_length": 945,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_078468.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000278100.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "BCCIP",
          "gene_hgnc_id": 978,
          "hgvs_c": "c.*454C>T",
          "hgvs_p": null,
          "transcript": "ENST00000901056.1",
          "protein_id": "ENSP00000571115.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 313,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 942,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000901056.1"
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        {
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      "computational_score_selected": 0.16119277477264404,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.49,
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      "phylop100way_score": 2.539,
      "phylop100way_prediction": "Benign",
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      "acmg_classification": "Uncertain_significance",
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      "acmg_by_gene": [
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
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            "BP4_Moderate"
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          "verdict": "Uncertain_significance",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}