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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-126996851-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=126996851&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 126996851,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001290223.2",
      "consequences": [
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 52,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001290223.2",
          "protein_id": "NP_001277152.2",
          "transcript_support_level": null,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1886,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5661,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 6840,
          "mane_select": "ENST00000623213.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 52,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "ENST00000623213.2",
          "protein_id": "ENSP00000485033.1",
          "transcript_support_level": 1,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1886,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5661,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 6840,
          "mane_select": "NM_001290223.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 52,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "ENST00000280333.9",
          "protein_id": "ENSP00000280333.6",
          "transcript_support_level": 1,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1865,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5598,
          "cdna_start": 686,
          "cdna_end": null,
          "cdna_length": 6797,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001377543.1",
          "protein_id": "NP_001364472.1",
          "transcript_support_level": null,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1919,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5760,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 6939,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 53,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.613A>G",
          "hgvs_p": "p.Lys205Glu",
          "transcript": "NM_001377544.1",
          "protein_id": "NP_001364473.1",
          "transcript_support_level": null,
          "aa_start": 205,
          "aa_end": null,
          "aa_length": 1877,
          "cds_start": 613,
          "cds_end": null,
          "cds_length": 5634,
          "cdna_start": 703,
          "cdna_end": null,
          "cdna_length": 6813,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 52,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001380.5",
          "protein_id": "NP_001371.2",
          "transcript_support_level": null,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1865,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5598,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 6777,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001377546.1",
          "protein_id": "NP_001364475.1",
          "transcript_support_level": null,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1846,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5541,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 6720,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001377547.1",
          "protein_id": "NP_001364476.1",
          "transcript_support_level": null,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1844,
          "cds_start": 577,
          "cds_end": null,
          "cds_length": 5535,
          "cdna_start": 667,
          "cdna_end": null,
          "cdna_length": 6714,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.493A>G",
          "hgvs_p": "p.Lys165Glu",
          "transcript": "NM_001377548.1",
          "protein_id": "NP_001364477.1",
          "transcript_support_level": null,
          "aa_start": 165,
          "aa_end": null,
          "aa_length": 1837,
          "cds_start": 493,
          "cds_end": null,
          "cds_length": 5514,
          "cdna_start": 583,
          "cdna_end": null,
          "cdna_length": 6693,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "K",
          "aa_alt": "E",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001377550.1",
          "protein_id": "NP_001364479.1",
          "transcript_support_level": null,
          "aa_start": 193,
          "aa_end": null,
          "aa_length": 1832,
          "cds_start": 577,
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          "cds_length": 5499,
          "cdna_start": 667,
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          "cdna_length": 6678,
          "mane_select": null,
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        {
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          "exon_count": 51,
          "intron_rank": null,
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          "gene_symbol": "DOCK1",
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          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001377553.1",
          "protein_id": "NP_001364482.1",
          "transcript_support_level": null,
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          "cds_start": 577,
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          "cds_length": 5478,
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          "mane_select": null,
          "mane_plus": null,
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        },
        {
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          "consequences": [
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          "exon_rank": 7,
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          "intron_rank": null,
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          "gene_symbol": "DOCK1",
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        {
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          "transcript": "NM_001377556.1",
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          "gene_symbol": "DOCK1",
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          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu",
          "transcript": "NM_001377558.1",
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        {
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        {
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          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.643A>G",
          "hgvs_p": "p.Lys215Glu",
          "transcript": "XM_011539422.4",
          "protein_id": "XP_011537724.1",
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        {
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          "transcript": "XM_017015813.3",
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        {
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          "gene_symbol": "DOCK1",
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          "hgvs_c": "c.643A>G",
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          "transcript": "XM_047424700.1",
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        {
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          "consequences": [
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          "intron_rank": null,
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          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.577A>G",
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        {
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          "transcript": "XR_007061946.1",
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        },
        {
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          ],
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          "gene_symbol": "DOCK1",
          "gene_hgnc_id": 2987,
          "hgvs_c": "c.131-11881A>G",
          "hgvs_p": null,
          "transcript": "NM_001377560.1",
          "protein_id": "NP_001364489.1",
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        },
        {
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          "consequences": [
            "intron_variant"
          ],
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          "exon_count": 3,
          "intron_rank": 2,
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          "gene_symbol": "ENSG00000223528",
          "gene_hgnc_id": null,
          "hgvs_c": "n.215+3425T>C",
          "hgvs_p": null,
          "transcript": "ENST00000627944.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": 566,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "DOCK1",
      "gene_hgnc_id": 2987,
      "dbsnp": null,
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.44552522897720337,
      "computational_prediction_selected": "Uncertain_significance",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.219,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.167,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.03,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 5.841,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_by_gene": [
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001290223.2",
          "gene_symbol": "DOCK1",
          "hgnc_id": 2987,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.577A>G",
          "hgvs_p": "p.Lys193Glu"
        },
        {
          "score": 2,
          "benign_score": 0,
          "pathogenic_score": 2,
          "criteria": [
            "PM2"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000627944.1",
          "gene_symbol": "ENSG00000223528",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.215+3425T>C",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}