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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-13319210-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=13319210&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 13319210,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_012247.5",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "NM_012247.5",
"protein_id": "NP_036379.2",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1483,
"cdna_end": null,
"cdna_length": 3265,
"mane_select": "ENST00000327347.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_012247.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000327347.10",
"protein_id": "ENSP00000367893.3",
"transcript_support_level": 1,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1483,
"cdna_end": null,
"cdna_length": 3265,
"mane_select": "NM_012247.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000327347.10"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.910C>G",
"hgvs_p": "p.Arg304Gly",
"transcript": "ENST00000545675.5",
"protein_id": "ENSP00000441119.2",
"transcript_support_level": 1,
"aa_start": 304,
"aa_end": null,
"aa_length": 325,
"cds_start": 910,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1217,
"cdna_end": null,
"cdna_length": 2988,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000545675.5"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.898C>G",
"hgvs_p": "p.Arg300Gly",
"transcript": "ENST00000378614.8",
"protein_id": "ENSP00000367877.3",
"transcript_support_level": 1,
"aa_start": 300,
"aa_end": null,
"aa_length": 321,
"cds_start": 898,
"cds_end": null,
"cds_length": 966,
"cdna_start": 1257,
"cdna_end": null,
"cdna_length": 2387,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000378614.8"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1222C>G",
"hgvs_p": "p.Arg408Gly",
"transcript": "ENST00000948205.1",
"protein_id": "ENSP00000618264.1",
"transcript_support_level": null,
"aa_start": 408,
"aa_end": null,
"aa_length": 429,
"cds_start": 1222,
"cds_end": null,
"cds_length": 1290,
"cdna_start": 1719,
"cdna_end": null,
"cdna_length": 2845,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000948205.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1195C>G",
"hgvs_p": "p.Arg399Gly",
"transcript": "ENST00000925353.1",
"protein_id": "ENSP00000595412.1",
"transcript_support_level": null,
"aa_start": 399,
"aa_end": null,
"aa_length": 420,
"cds_start": 1195,
"cds_end": null,
"cds_length": 1263,
"cdna_start": 1505,
"cdna_end": null,
"cdna_length": 1739,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925353.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000877592.1",
"protein_id": "ENSP00000547651.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1287,
"cdna_end": null,
"cdna_length": 3069,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877592.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000925347.1",
"protein_id": "ENSP00000595406.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1410,
"cdna_end": null,
"cdna_length": 3182,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925347.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000925348.1",
"protein_id": "ENSP00000595407.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1452,
"cdna_end": null,
"cdna_length": 2582,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925348.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000925349.1",
"protein_id": "ENSP00000595408.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1248,
"cdna_end": null,
"cdna_length": 3030,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925349.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000925351.1",
"protein_id": "ENSP00000595410.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1271,
"cdna_end": null,
"cdna_length": 3043,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925351.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000925352.1",
"protein_id": "ENSP00000595411.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1507,
"cdna_end": null,
"cdna_length": 1741,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925352.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "ENST00000925355.1",
"protein_id": "ENSP00000595414.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
"cds_length": 1179,
"cdna_start": 1247,
"cdna_end": null,
"cdna_length": 2392,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925355.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1105C>G",
"hgvs_p": "p.Arg369Gly",
"transcript": "NM_001375769.1",
"protein_id": "NP_001362698.1",
"transcript_support_level": null,
"aa_start": 369,
"aa_end": null,
"aa_length": 390,
"cds_start": 1105,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 1477,
"cdna_end": null,
"cdna_length": 3259,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375769.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1105C>G",
"hgvs_p": "p.Arg369Gly",
"transcript": "ENST00000877591.1",
"protein_id": "ENSP00000547650.1",
"transcript_support_level": null,
"aa_start": 369,
"aa_end": null,
"aa_length": 390,
"cds_start": 1105,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 1242,
"cdna_end": null,
"cdna_length": 3027,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000877591.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1105C>G",
"hgvs_p": "p.Arg369Gly",
"transcript": "ENST00000925350.1",
"protein_id": "ENSP00000595409.1",
"transcript_support_level": null,
"aa_start": 369,
"aa_end": null,
"aa_length": 390,
"cds_start": 1105,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 1302,
"cdna_end": null,
"cdna_length": 2429,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925350.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.910C>G",
"hgvs_p": "p.Arg304Gly",
"transcript": "NM_001195602.2",
"protein_id": "NP_001182531.1",
"transcript_support_level": null,
"aa_start": 304,
"aa_end": null,
"aa_length": 325,
"cds_start": 910,
"cds_end": null,
"cds_length": 978,
"cdna_start": 1212,
"cdna_end": null,
"cdna_length": 2994,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001195602.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.898C>G",
"hgvs_p": "p.Arg300Gly",
"transcript": "NM_001195604.2",
"protein_id": "NP_001182533.1",
"transcript_support_level": null,
"aa_start": 300,
"aa_end": null,
"aa_length": 321,
"cds_start": 898,
"cds_end": null,
"cds_length": 966,
"cdna_start": 1270,
"cdna_end": null,
"cdna_length": 3052,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001195604.2"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.553C>G",
"hgvs_p": "p.Arg185Gly",
"transcript": "ENST00000925354.1",
"protein_id": "ENSP00000595413.1",
"transcript_support_level": null,
"aa_start": 185,
"aa_end": null,
"aa_length": 206,
"cds_start": 553,
"cds_end": null,
"cds_length": 621,
"cdna_start": 679,
"cdna_end": null,
"cdna_length": 915,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925354.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly",
"transcript": "XM_047424839.1",
"protein_id": "XP_047280795.1",
"transcript_support_level": null,
"aa_start": 371,
"aa_end": null,
"aa_length": 392,
"cds_start": 1111,
"cds_end": null,
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"cdna_start": 1612,
"cdna_end": null,
"cdna_length": 3394,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047424839.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.1105C>G",
"hgvs_p": "p.Arg369Gly",
"transcript": "XM_047424840.1",
"protein_id": "XP_047280796.1",
"transcript_support_level": null,
"aa_start": 369,
"aa_end": null,
"aa_length": 390,
"cds_start": 1105,
"cds_end": null,
"cds_length": 1173,
"cdna_start": 1606,
"cdna_end": null,
"cdna_length": 3388,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047424840.1"
},
{
"aa_ref": "R",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "c.904C>G",
"hgvs_p": "p.Arg302Gly",
"transcript": "XM_047424841.1",
"protein_id": "XP_047280797.1",
"transcript_support_level": null,
"aa_start": 302,
"aa_end": null,
"aa_length": 323,
"cds_start": 904,
"cds_end": null,
"cds_length": 972,
"cdna_start": 1206,
"cdna_end": null,
"cdna_length": 2988,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047424841.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"hgvs_c": "n.1701C>G",
"hgvs_p": null,
"transcript": "NR_164738.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3483,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_164738.1"
}
],
"gene_symbol": "SEPHS1",
"gene_hgnc_id": 19685,
"dbsnp": "rs2131679103",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.2881658673286438,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.388,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.993,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.12,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 8.114,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 6,
"acmg_classification": "Likely_pathogenic",
"acmg_criteria": "PM2,PM5,PP2,PP5_Moderate,BP4",
"acmg_by_gene": [
{
"score": 6,
"benign_score": 1,
"pathogenic_score": 7,
"criteria": [
"PM2",
"PM5",
"PP2",
"PP5_Moderate",
"BP4"
],
"verdict": "Likely_pathogenic",
"transcript": "NM_012247.5",
"gene_symbol": "SEPHS1",
"hgnc_id": 19685,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.1111C>G",
"hgvs_p": "p.Arg371Gly"
}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely pathogenic",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LP:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}