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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-29458518-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=29458518&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 29458518,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_021738.3",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6474G>A",
"hgvs_p": "p.Pro2158Pro",
"transcript": "NM_021738.3",
"protein_id": "NP_068506.2",
"transcript_support_level": null,
"aa_start": 2158,
"aa_end": null,
"aa_length": 2214,
"cds_start": 6474,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000355867.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_021738.3"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6474G>A",
"hgvs_p": "p.Pro2158Pro",
"transcript": "ENST00000355867.9",
"protein_id": "ENSP00000348128.4",
"transcript_support_level": 1,
"aa_start": 2158,
"aa_end": null,
"aa_length": 2214,
"cds_start": 6474,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_021738.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000355867.9"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5196G>A",
"hgvs_p": "p.Pro1732Pro",
"transcript": "ENST00000375400.7",
"protein_id": "ENSP00000364549.3",
"transcript_support_level": 1,
"aa_start": 1732,
"aa_end": null,
"aa_length": 1788,
"cds_start": 5196,
"cds_end": null,
"cds_length": 5367,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000375400.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SVIL-AS1",
"gene_hgnc_id": null,
"hgvs_c": "n.212-28637C>T",
"hgvs_p": null,
"transcript": "ENST00000413405.7",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000413405.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SVIL-AS1",
"gene_hgnc_id": null,
"hgvs_c": "n.213-24315C>T",
"hgvs_p": null,
"transcript": "ENST00000414457.7",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000414457.7"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 39,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6600G>A",
"hgvs_p": "p.Pro2200Pro",
"transcript": "ENST00000860295.1",
"protein_id": "ENSP00000530354.1",
"transcript_support_level": null,
"aa_start": 2200,
"aa_end": null,
"aa_length": 2256,
"cds_start": 6600,
"cds_end": null,
"cds_length": 6771,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860295.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 41,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6600G>A",
"hgvs_p": "p.Pro2200Pro",
"transcript": "ENST00000946673.1",
"protein_id": "ENSP00000616732.1",
"transcript_support_level": null,
"aa_start": 2200,
"aa_end": null,
"aa_length": 2256,
"cds_start": 6600,
"cds_end": null,
"cds_length": 6771,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946673.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 39,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6474G>A",
"hgvs_p": "p.Pro2158Pro",
"transcript": "ENST00000860289.1",
"protein_id": "ENSP00000530348.1",
"transcript_support_level": null,
"aa_start": 2158,
"aa_end": null,
"aa_length": 2214,
"cds_start": 6474,
"cds_end": null,
"cds_length": 6645,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860289.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 40,
"exon_rank_end": null,
"exon_count": 41,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6429G>A",
"hgvs_p": "p.Pro2143Pro",
"transcript": "ENST00000946674.1",
"protein_id": "ENSP00000616733.1",
"transcript_support_level": null,
"aa_start": 2143,
"aa_end": null,
"aa_length": 2199,
"cds_start": 6429,
"cds_end": null,
"cds_length": 6600,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946674.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 38,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6429G>A",
"hgvs_p": "p.Pro2143Pro",
"transcript": "ENST00000946678.1",
"protein_id": "ENSP00000616737.1",
"transcript_support_level": null,
"aa_start": 2143,
"aa_end": null,
"aa_length": 2199,
"cds_start": 6429,
"cds_end": null,
"cds_length": 6600,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946678.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 36,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6378G>A",
"hgvs_p": "p.Pro2126Pro",
"transcript": "ENST00000375398.6",
"protein_id": "ENSP00000364547.3",
"transcript_support_level": 5,
"aa_start": 2126,
"aa_end": null,
"aa_length": 2182,
"cds_start": 6378,
"cds_end": null,
"cds_length": 6549,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000375398.6"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 38,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6378G>A",
"hgvs_p": "p.Pro2126Pro",
"transcript": "ENST00000946672.1",
"protein_id": "ENSP00000616731.1",
"transcript_support_level": null,
"aa_start": 2126,
"aa_end": null,
"aa_length": 2182,
"cds_start": 6378,
"cds_end": null,
"cds_length": 6549,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946672.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 36,
"exon_rank_end": null,
"exon_count": 37,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6303G>A",
"hgvs_p": "p.Pro2101Pro",
"transcript": "ENST00000860298.1",
"protein_id": "ENSP00000530357.1",
"transcript_support_level": null,
"aa_start": 2101,
"aa_end": null,
"aa_length": 2157,
"cds_start": 6303,
"cds_end": null,
"cds_length": 6474,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860298.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6297G>A",
"hgvs_p": "p.Pro2099Pro",
"transcript": "ENST00000946670.1",
"protein_id": "ENSP00000616729.1",
"transcript_support_level": null,
"aa_start": 2099,
"aa_end": null,
"aa_length": 2155,
"cds_start": 6297,
"cds_end": null,
"cds_length": 6468,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946670.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 38,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6249G>A",
"hgvs_p": "p.Pro2083Pro",
"transcript": "ENST00000860288.1",
"protein_id": "ENSP00000530347.1",
"transcript_support_level": null,
"aa_start": 2083,
"aa_end": null,
"aa_length": 2139,
"cds_start": 6249,
"cds_end": null,
"cds_length": 6420,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860288.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.6207G>A",
"hgvs_p": "p.Pro2069Pro",
"transcript": "ENST00000860291.1",
"protein_id": "ENSP00000530350.1",
"transcript_support_level": null,
"aa_start": 2069,
"aa_end": null,
"aa_length": 2125,
"cds_start": 6207,
"cds_end": null,
"cds_length": 6378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860291.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 38,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5544G>A",
"hgvs_p": "p.Pro1848Pro",
"transcript": "NM_001323599.2",
"protein_id": "NP_001310528.1",
"transcript_support_level": null,
"aa_start": 1848,
"aa_end": null,
"aa_length": 1904,
"cds_start": 5544,
"cds_end": null,
"cds_length": 5715,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001323599.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 38,
"exon_rank_end": null,
"exon_count": 39,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5544G>A",
"hgvs_p": "p.Pro1848Pro",
"transcript": "ENST00000674475.1",
"protein_id": "ENSP00000501521.1",
"transcript_support_level": null,
"aa_start": 1848,
"aa_end": null,
"aa_length": 1904,
"cds_start": 5544,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "ENST00000674475.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5499G>A",
"hgvs_p": "p.Pro1833Pro",
"transcript": "ENST00000946679.1",
"protein_id": "ENSP00000616738.1",
"transcript_support_level": null,
"aa_start": 1833,
"aa_end": null,
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"cds_start": 5499,
"cds_end": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946679.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5493G>A",
"hgvs_p": "p.Pro1831Pro",
"transcript": "ENST00000946680.1",
"protein_id": "ENSP00000616739.1",
"transcript_support_level": null,
"aa_start": 1831,
"aa_end": null,
"aa_length": 1887,
"cds_start": 5493,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946680.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 35,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5448G>A",
"hgvs_p": "p.Pro1816Pro",
"transcript": "ENST00000860299.1",
"protein_id": "ENSP00000530358.1",
"transcript_support_level": null,
"aa_start": 1816,
"aa_end": null,
"aa_length": 1872,
"cds_start": 5448,
"cds_end": null,
"cds_length": 5619,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000860299.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 37,
"exon_rank_end": null,
"exon_count": 38,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SVIL",
"gene_hgnc_id": 11480,
"hgvs_c": "c.5448G>A",
"hgvs_p": "p.Pro1816Pro",
"transcript": "ENST00000924356.1",
"protein_id": "ENSP00000594415.1",
"transcript_support_level": null,
"aa_start": 1816,
"aa_end": null,
"aa_length": 1872,
"cds_start": 5448,
"cds_end": null,
"cds_length": 5619,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
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{
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"BP7"
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{
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],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}