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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-32908269-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=32908269&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 12,
          "criteria": [
            "BP4_Strong",
            "BA1"
          ],
          "effects": [
            "intron_variant"
          ],
          "gene_symbol": "ITGB1",
          "hgnc_id": 6153,
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": -12,
          "transcript": "NM_033668.2",
          "verdict": "Benign"
        }
      ],
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BA1",
      "acmg_score": -12,
      "allele_count_reference_population": 125237,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "C",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.84,
      "chr": "10",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": -0.8399999737739563,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 798,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3735,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2397,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_002211.4",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000302278.8",
          "protein_coding": true,
          "protein_id": "NP_002202.2",
          "strand": false,
          "transcript": "NM_002211.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 798,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3735,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2397,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000302278.8",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002211.4",
          "protein_coding": true,
          "protein_id": "ENSP00000303351.3",
          "strand": false,
          "transcript": "ENST00000302278.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 741,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3707,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2226,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000488427.2",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2160+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000417508.2",
          "strand": false,
          "transcript": "ENST00000488427.2",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 789,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4489,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2370,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 15,
          "exon_rank": 15,
          "exon_rank_end": null,
          "feature": "ENST00000676460.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.*60T>G",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000504641.1",
          "strand": false,
          "transcript": "ENST00000676460.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 877,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3875,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2634,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000966597.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2568+99T>G",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000636656.1",
          "strand": false,
          "transcript": "ENST00000966597.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 825,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7110,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2478,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 18,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000677310.2",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000504508.1",
          "strand": false,
          "transcript": "ENST00000677310.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 825,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3780,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2478,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000678766.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000503538.1",
          "strand": false,
          "transcript": "ENST00000678766.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 819,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3779,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2460,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000676659.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000502979.1",
          "strand": false,
          "transcript": "ENST00000676659.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 809,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4021,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2430,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000474568.6",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2355+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000420282.2",
          "strand": false,
          "transcript": "ENST00000474568.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 809,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4809,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2430,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000677363.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2355+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000504791.1",
          "strand": false,
          "transcript": "ENST00000677363.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 809,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3679,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2430,
          "cds_start": null,
          "consequences": [
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          ],
          "exon_count": 17,
          "exon_rank": null,
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          "feature": "ENST00000898627.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2364+99T>G",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000568686.1",
          "strand": false,
          "transcript": "ENST00000898627.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
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          "aa_length": 808,
          "aa_ref": null,
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3710,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2427,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000966589.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2361+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000636648.1",
          "strand": false,
          "transcript": "ENST00000966589.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
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          "aa_ref": null,
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3695,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2418,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000898622.1",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2352+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000568681.1",
          "strand": false,
          "transcript": "ENST00000898622.1",
          "transcript_support_level": null
        },
        {
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          "aa_ref": null,
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          "cdna_length": 3730,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2406,
          "cds_start": null,
          "consequences": [
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          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_033668.2",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 14,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_391988.1",
          "strand": false,
          "transcript": "NM_033668.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 801,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3816,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2406,
          "cds_start": null,
          "consequences": [
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          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000423113.6",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000388694.1",
          "strand": false,
          "transcript": "ENST00000423113.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
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          "aa_length": 801,
          "aa_ref": null,
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3726,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2406,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000488494.6",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2340+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000418725.2",
          "strand": false,
          "transcript": "ENST00000488494.6",
          "transcript_support_level": 4
        },
        {
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          "biotype": "protein_coding",
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          "cdna_end": null,
          "cdna_length": 3852,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2397,
          "cds_start": null,
          "consequences": [
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          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_133376.3",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_596867.1",
          "strand": false,
          "transcript": "NM_133376.3",
          "transcript_support_level": null
        },
        {
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          "aa_length": 798,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
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          "cdna_end": null,
          "cdna_length": 3784,
          "cdna_start": null,
          "cds_end": null,
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          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000396033.6",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 15,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000379350.2",
          "strand": false,
          "transcript": "ENST00000396033.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": null,
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          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3982,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 2397,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 17,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000417122.7",
          "gene_hgnc_id": 6153,
          "gene_symbol": "ITGB1",
          "hgvs_c": "c.2331+99T>G",
          "hgvs_p": null,
          "intron_rank": 16,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000404546.3",
          "strand": false,
          "transcript": "ENST00000417122.7",
          "transcript_support_level": 4
        },
        {
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          "aa_length": 798,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
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}
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