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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-34111438-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=34111438&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 34111438,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000374788.8",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3793G>A",
"hgvs_p": "p.Gly1265Ser",
"transcript": "NM_001184785.2",
"protein_id": "NP_001171714.1",
"transcript_support_level": null,
"aa_start": 1265,
"aa_end": null,
"aa_length": 1353,
"cds_start": 3793,
"cds_end": null,
"cds_length": 4062,
"cdna_start": 4094,
"cdna_end": null,
"cdna_length": 5971,
"mane_select": "ENST00000374788.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3793G>A",
"hgvs_p": "p.Gly1265Ser",
"transcript": "ENST00000374788.8",
"protein_id": "ENSP00000363920.3",
"transcript_support_level": 1,
"aa_start": 1265,
"aa_end": null,
"aa_length": 1353,
"cds_start": 3793,
"cds_end": null,
"cds_length": 4062,
"cdna_start": 4094,
"cdna_end": null,
"cdna_length": 5971,
"mane_select": "NM_001184785.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3802G>A",
"hgvs_p": "p.Gly1268Ser",
"transcript": "ENST00000374789.8",
"protein_id": "ENSP00000363921.3",
"transcript_support_level": 1,
"aa_start": 1268,
"aa_end": null,
"aa_length": 1356,
"cds_start": 3802,
"cds_end": null,
"cds_length": 4071,
"cdna_start": 4103,
"cdna_end": null,
"cdna_length": 5980,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3754G>A",
"hgvs_p": "p.Gly1252Ser",
"transcript": "ENST00000545693.5",
"protein_id": "ENSP00000443147.1",
"transcript_support_level": 1,
"aa_start": 1252,
"aa_end": null,
"aa_length": 1340,
"cds_start": 3754,
"cds_end": null,
"cds_length": 4023,
"cdna_start": 4084,
"cdna_end": null,
"cdna_length": 5962,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3691G>A",
"hgvs_p": "p.Gly1231Ser",
"transcript": "ENST00000346874.9",
"protein_id": "ENSP00000340591.4",
"transcript_support_level": 1,
"aa_start": 1231,
"aa_end": null,
"aa_length": 1319,
"cds_start": 3691,
"cds_end": null,
"cds_length": 3960,
"cdna_start": 3992,
"cdna_end": null,
"cdna_length": 5869,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3664G>A",
"hgvs_p": "p.Gly1222Ser",
"transcript": "ENST00000350537.9",
"protein_id": "ENSP00000311986.6",
"transcript_support_level": 1,
"aa_start": 1222,
"aa_end": null,
"aa_length": 1310,
"cds_start": 3664,
"cds_end": null,
"cds_length": 3933,
"cdna_start": 3965,
"cdna_end": null,
"cdna_length": 5842,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3532G>A",
"hgvs_p": "p.Gly1178Ser",
"transcript": "ENST00000545260.5",
"protein_id": "ENSP00000440857.1",
"transcript_support_level": 1,
"aa_start": 1178,
"aa_end": null,
"aa_length": 1266,
"cds_start": 3532,
"cds_end": null,
"cds_length": 3801,
"cdna_start": 3862,
"cdna_end": null,
"cdna_length": 5740,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3466G>A",
"hgvs_p": "p.Gly1156Ser",
"transcript": "ENST00000374794.8",
"protein_id": "ENSP00000363926.3",
"transcript_support_level": 1,
"aa_start": 1156,
"aa_end": null,
"aa_length": 1244,
"cds_start": 3466,
"cds_end": null,
"cds_length": 3735,
"cdna_start": 3767,
"cdna_end": null,
"cdna_length": 5644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3802G>A",
"hgvs_p": "p.Gly1268Ser",
"transcript": "NM_019619.4",
"protein_id": "NP_062565.2",
"transcript_support_level": null,
"aa_start": 1268,
"aa_end": null,
"aa_length": 1356,
"cds_start": 3802,
"cds_end": null,
"cds_length": 4071,
"cdna_start": 4103,
"cdna_end": null,
"cdna_length": 5980,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3754G>A",
"hgvs_p": "p.Gly1252Ser",
"transcript": "NM_001184786.2",
"protein_id": "NP_001171715.1",
"transcript_support_level": null,
"aa_start": 1252,
"aa_end": null,
"aa_length": 1340,
"cds_start": 3754,
"cds_end": null,
"cds_length": 4023,
"cdna_start": 4055,
"cdna_end": null,
"cdna_length": 5932,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3721G>A",
"hgvs_p": "p.Gly1241Ser",
"transcript": "ENST00000696673.1",
"protein_id": "ENSP00000512797.1",
"transcript_support_level": null,
"aa_start": 1241,
"aa_end": null,
"aa_length": 1329,
"cds_start": 3721,
"cds_end": null,
"cds_length": 3990,
"cdna_start": 4406,
"cdna_end": null,
"cdna_length": 6283,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3691G>A",
"hgvs_p": "p.Gly1231Ser",
"transcript": "NM_001184787.2",
"protein_id": "NP_001171716.1",
"transcript_support_level": null,
"aa_start": 1231,
"aa_end": null,
"aa_length": 1319,
"cds_start": 3691,
"cds_end": null,
"cds_length": 3960,
"cdna_start": 3992,
"cdna_end": null,
"cdna_length": 5869,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3664G>A",
"hgvs_p": "p.Gly1222Ser",
"transcript": "NM_001184788.2",
"protein_id": "NP_001171717.1",
"transcript_support_level": null,
"aa_start": 1222,
"aa_end": null,
"aa_length": 1310,
"cds_start": 3664,
"cds_end": null,
"cds_length": 3933,
"cdna_start": 3965,
"cdna_end": null,
"cdna_length": 5842,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3622G>A",
"hgvs_p": "p.Gly1208Ser",
"transcript": "ENST00000374790.8",
"protein_id": "ENSP00000363922.3",
"transcript_support_level": 5,
"aa_start": 1208,
"aa_end": null,
"aa_length": 1296,
"cds_start": 3622,
"cds_end": null,
"cds_length": 3891,
"cdna_start": 3923,
"cdna_end": null,
"cdna_length": 5800,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3553G>A",
"hgvs_p": "p.Gly1185Ser",
"transcript": "NM_001184789.2",
"protein_id": "NP_001171718.1",
"transcript_support_level": null,
"aa_start": 1185,
"aa_end": null,
"aa_length": 1273,
"cds_start": 3553,
"cds_end": null,
"cds_length": 3822,
"cdna_start": 3854,
"cdna_end": null,
"cdna_length": 5731,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3532G>A",
"hgvs_p": "p.Gly1178Ser",
"transcript": "NM_001184790.2",
"protein_id": "NP_001171719.1",
"transcript_support_level": null,
"aa_start": 1178,
"aa_end": null,
"aa_length": 1266,
"cds_start": 3532,
"cds_end": null,
"cds_length": 3801,
"cdna_start": 3833,
"cdna_end": null,
"cdna_length": 5710,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"hgvs_c": "c.3466G>A",
"hgvs_p": "p.Gly1156Ser",
"transcript": "NM_001184791.2",
"protein_id": "NP_001171720.1",
"transcript_support_level": null,
"aa_start": 1156,
"aa_end": null,
"aa_length": 1244,
"cds_start": 3466,
"cds_end": null,
"cds_length": 3735,
"cdna_start": 3767,
"cdna_end": null,
"cdna_length": 5644,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "PARD3",
"gene_hgnc_id": 16051,
"dbsnp": "rs201774041",
"frequency_reference_population": 0.000045224144,
"hom_count_reference_population": 0,
"allele_count_reference_population": 73,
"gnomad_exomes_af": 0.0000471994,
"gnomad_genomes_af": 0.0000262643,
"gnomad_exomes_ac": 69,
"gnomad_genomes_ac": 4,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.35229551792144775,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.178,
"revel_prediction": "Benign",
"alphamissense_score": 0.2349,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.1,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 7.568,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -5,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4,BS2",
"acmg_by_gene": [
{
"score": -5,
"benign_score": 5,
"pathogenic_score": 0,
"criteria": [
"BP4",
"BS2"
],
"verdict": "Likely_benign",
"transcript": "ENST00000374788.8",
"gene_symbol": "PARD3",
"hgnc_id": 16051,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.3793G>A",
"hgvs_p": "p.Gly1265Ser"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}