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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-5963764-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=5963764&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 5963764,
      "ref": "T",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001256765.1",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.361A>G",
          "hgvs_p": "p.Ser121Gly",
          "transcript": "NM_002189.4",
          "protein_id": "NP_002180.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 267,
          "cds_start": 361,
          "cds_end": null,
          "cds_length": 804,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000379977.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002189.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.361A>G",
          "hgvs_p": "p.Ser121Gly",
          "transcript": "ENST00000379977.8",
          "protein_id": "ENSP00000369312.3",
          "transcript_support_level": 1,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 267,
          "cds_start": 361,
          "cds_end": null,
          "cds_length": 804,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_002189.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000379977.8"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.619A>G",
          "hgvs_p": "p.Ser207Gly",
          "transcript": "ENST00000397248.6",
          "protein_id": "ENSP00000380421.3",
          "transcript_support_level": 1,
          "aa_start": 207,
          "aa_end": null,
          "aa_length": 353,
          "cds_start": 619,
          "cds_end": null,
          "cds_length": 1062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397248.6"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.514A>G",
          "hgvs_p": "p.Ser172Gly",
          "transcript": "ENST00000622442.4",
          "protein_id": "ENSP00000480949.1",
          "transcript_support_level": 1,
          "aa_start": 172,
          "aa_end": null,
          "aa_length": 346,
          "cds_start": 514,
          "cds_end": null,
          "cds_length": 1041,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000622442.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.514A>G",
          "hgvs_p": "p.Ser172Gly",
          "transcript": "ENST00000620345.4",
          "protein_id": "ENSP00000479839.1",
          "transcript_support_level": 1,
          "aa_start": 172,
          "aa_end": null,
          "aa_length": 331,
          "cds_start": 514,
          "cds_end": null,
          "cds_length": 996,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000620345.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.514A>G",
          "hgvs_p": "p.Ser172Gly",
          "transcript": "ENST00000397251.7",
          "protein_id": "ENSP00000380423.3",
          "transcript_support_level": 1,
          "aa_start": 172,
          "aa_end": null,
          "aa_length": 308,
          "cds_start": 514,
          "cds_end": null,
          "cds_length": 927,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397251.7"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.514A>G",
          "hgvs_p": "p.Ser172Gly",
          "transcript": "ENST00000620865.4",
          "protein_id": "ENSP00000478525.1",
          "transcript_support_level": 1,
          "aa_start": 172,
          "aa_end": null,
          "aa_length": 305,
          "cds_start": 514,
          "cds_end": null,
          "cds_length": 918,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000620865.4"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.253A>G",
          "hgvs_p": "p.Ser85Gly",
          "transcript": "ENST00000525219.6",
          "protein_id": "ENSP00000431529.2",
          "transcript_support_level": 1,
          "aa_start": 85,
          "aa_end": null,
          "aa_length": 231,
          "cds_start": 253,
          "cds_end": null,
          "cds_length": 696,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000525219.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "n.542A>G",
          "hgvs_p": null,
          "transcript": "ENST00000534292.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000534292.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "n.404-3197A>G",
          "hgvs_p": null,
          "transcript": "ENST00000379974.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "ENST00000379974.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.619A>G",
          "hgvs_p": "p.Ser207Gly",
          "transcript": "NM_001256765.1",
          "protein_id": "NP_001243694.1",
          "transcript_support_level": null,
          "aa_start": 207,
          "aa_end": null,
          "aa_length": 353,
          "cds_start": 619,
          "cds_end": null,
          "cds_length": 1062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001256765.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.358A>G",
          "hgvs_p": "p.Ser120Gly",
          "transcript": "ENST00000851428.1",
          "protein_id": "ENSP00000521487.1",
          "transcript_support_level": null,
          "aa_start": 120,
          "aa_end": null,
          "aa_length": 266,
          "cds_start": 358,
          "cds_end": null,
          "cds_length": 801,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851428.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.361A>G",
          "hgvs_p": "p.Ser121Gly",
          "transcript": "ENST00000397255.7",
          "protein_id": "ENSP00000380426.3",
          "transcript_support_level": 5,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 252,
          "cds_start": 361,
          "cds_end": null,
          "cds_length": 759,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397255.7"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.514A>G",
          "hgvs_p": "p.Ser172Gly",
          "transcript": "ENST00000962787.1",
          "protein_id": "ENSP00000632846.1",
          "transcript_support_level": null,
          "aa_start": 172,
          "aa_end": null,
          "aa_length": 240,
          "cds_start": 514,
          "cds_end": null,
          "cds_length": 723,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000962787.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.361A>G",
          "hgvs_p": "p.Ser121Gly",
          "transcript": "ENST00000851421.1",
          "protein_id": "ENSP00000521479.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 234,
          "cds_start": 361,
          "cds_end": null,
          "cds_length": 705,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851421.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.253A>G",
          "hgvs_p": "p.Ser85Gly",
          "transcript": "NM_001243539.2",
          "protein_id": "NP_001230468.1",
          "transcript_support_level": null,
          "aa_start": 85,
          "aa_end": null,
          "aa_length": 231,
          "cds_start": 253,
          "cds_end": null,
          "cds_length": 696,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001243539.2"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.253A>G",
          "hgvs_p": "p.Ser85Gly",
          "transcript": "NM_001351096.1",
          "protein_id": "NP_001338025.1",
          "transcript_support_level": null,
          "aa_start": 85,
          "aa_end": null,
          "aa_length": 216,
          "cds_start": 253,
          "cds_end": null,
          "cds_length": 651,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001351096.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.166A>G",
          "hgvs_p": "p.Ser56Gly",
          "transcript": "ENST00000851425.1",
          "protein_id": "ENSP00000521484.1",
          "transcript_support_level": null,
          "aa_start": 56,
          "aa_end": null,
          "aa_length": 202,
          "cds_start": 166,
          "cds_end": null,
          "cds_length": 609,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000851425.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.361A>G",
          "hgvs_p": "p.Ser121Gly",
          "transcript": "ENST00000962788.1",
          "protein_id": "ENSP00000632847.1",
          "transcript_support_level": null,
          "aa_start": 121,
          "aa_end": null,
          "aa_length": 189,
          "cds_start": 361,
          "cds_end": null,
          "cds_length": 570,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000962788.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL15RA",
          "gene_hgnc_id": 5978,
          "hgvs_c": "c.166A>G",
          "hgvs_p": "p.Ser56Gly",
          "transcript": "ENST00000962789.1",
          "protein_id": "ENSP00000632848.1",
          "transcript_support_level": null,
          "aa_start": 56,
          "aa_end": null,
          "aa_length": 169,
          "cds_start": 166,
          "cds_end": null,
          "cds_length": 510,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000962789.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "G",
          "canonical": false,
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      "gnomad_exomes_homalt": 0,
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      "computational_score_selected": 0.06949910521507263,
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      "computational_source_selected": "MetaRNN",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Benign",
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      "bayesdelnoaf_score": -0.33,
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      "phylop100way_score": 1.268,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.1,
      "spliceai_max_prediction": "Benign",
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      "mitotip_prediction": null,
      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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          "verdict": "Likely_benign",
          "transcript": "NM_001256765.1",
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        {
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          "criteria": [
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          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000772717.1",
          "gene_symbol": "ENSG00000300557",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.323-420T>C",
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        },
        {
          "score": -2,
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          ],
          "verdict": "Likely_benign",
          "transcript": "XR_001747348.2",
          "gene_symbol": "LOC107984200",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
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          "inheritance_mode": "",
          "hgvs_c": "n.1321-420T>C",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}