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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-65920389-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=65920389&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 65920389,
"ref": "T",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_013266.4",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2629A>C",
"hgvs_p": "p.Lys877Gln",
"transcript": "NM_013266.4",
"protein_id": "NP_037398.2",
"transcript_support_level": null,
"aa_start": 877,
"aa_end": null,
"aa_length": 895,
"cds_start": 2629,
"cds_end": null,
"cds_length": 2688,
"cdna_start": 2830,
"cdna_end": null,
"cdna_length": 10696,
"mane_select": "ENST00000433211.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2629A>C",
"hgvs_p": "p.Lys877Gln",
"transcript": "ENST00000433211.7",
"protein_id": "ENSP00000389714.1",
"transcript_support_level": 1,
"aa_start": 877,
"aa_end": null,
"aa_length": 895,
"cds_start": 2629,
"cds_end": null,
"cds_length": 2688,
"cdna_start": 2830,
"cdna_end": null,
"cdna_length": 10696,
"mane_select": "NM_013266.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2629A>C",
"hgvs_p": "p.Lys877Gln",
"transcript": "NM_001127384.3",
"protein_id": "NP_001120856.1",
"transcript_support_level": null,
"aa_start": 877,
"aa_end": null,
"aa_length": 895,
"cds_start": 2629,
"cds_end": null,
"cds_length": 2688,
"cdna_start": 2754,
"cdna_end": null,
"cdna_length": 10620,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2629A>C",
"hgvs_p": "p.Lys877Gln",
"transcript": "ENST00000682758.1",
"protein_id": "ENSP00000508047.1",
"transcript_support_level": null,
"aa_start": 877,
"aa_end": null,
"aa_length": 895,
"cds_start": 2629,
"cds_end": null,
"cds_length": 2688,
"cdna_start": 2831,
"cdna_end": null,
"cdna_length": 10763,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2629A>C",
"hgvs_p": "p.Lys877Gln",
"transcript": "ENST00000684154.1",
"protein_id": "ENSP00000508371.1",
"transcript_support_level": null,
"aa_start": 877,
"aa_end": null,
"aa_length": 895,
"cds_start": 2629,
"cds_end": null,
"cds_length": 2688,
"cdna_start": 2834,
"cdna_end": null,
"cdna_length": 10766,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2428A>C",
"hgvs_p": "p.Lys810Gln",
"transcript": "ENST00000682945.1",
"protein_id": "ENSP00000506843.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 828,
"cds_start": 2428,
"cds_end": null,
"cds_length": 2487,
"cdna_start": 2622,
"cdna_end": null,
"cdna_length": 4919,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2854A>C",
"hgvs_p": "p.Lys952Gln",
"transcript": "XM_017016152.2",
"protein_id": "XP_016871641.1",
"transcript_support_level": null,
"aa_start": 952,
"aa_end": null,
"aa_length": 970,
"cds_start": 2854,
"cds_end": null,
"cds_length": 2913,
"cdna_start": 3096,
"cdna_end": null,
"cdna_length": 10962,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2698A>C",
"hgvs_p": "p.Lys900Gln",
"transcript": "XM_017016151.2",
"protein_id": "XP_016871640.1",
"transcript_support_level": null,
"aa_start": 900,
"aa_end": null,
"aa_length": 918,
"cds_start": 2698,
"cds_end": null,
"cds_length": 2757,
"cdna_start": 2823,
"cdna_end": null,
"cdna_length": 10689,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.2665A>C",
"hgvs_p": "p.Lys889Gln",
"transcript": "XM_047425124.1",
"protein_id": "XP_047281080.1",
"transcript_support_level": null,
"aa_start": 889,
"aa_end": null,
"aa_length": 907,
"cds_start": 2665,
"cds_end": null,
"cds_length": 2724,
"cdna_start": 2872,
"cdna_end": null,
"cdna_length": 10738,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.1846A>C",
"hgvs_p": "p.Lys616Gln",
"transcript": "XM_017016155.3",
"protein_id": "XP_016871644.1",
"transcript_support_level": null,
"aa_start": 616,
"aa_end": null,
"aa_length": 634,
"cds_start": 1846,
"cds_end": null,
"cds_length": 1905,
"cdna_start": 2209,
"cdna_end": null,
"cdna_length": 10075,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 14,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.1846A>C",
"hgvs_p": "p.Lys616Gln",
"transcript": "XM_017016156.2",
"protein_id": "XP_016871645.1",
"transcript_support_level": null,
"aa_start": 616,
"aa_end": null,
"aa_length": 634,
"cds_start": 1846,
"cds_end": null,
"cds_length": 1905,
"cdna_start": 2146,
"cdna_end": null,
"cdna_length": 10012,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "Q",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "c.1534A>C",
"hgvs_p": "p.Lys512Gln",
"transcript": "XM_017016157.3",
"protein_id": "XP_016871646.1",
"transcript_support_level": null,
"aa_start": 512,
"aa_end": null,
"aa_length": 530,
"cds_start": 1534,
"cds_end": null,
"cds_length": 1593,
"cdna_start": 2237,
"cdna_end": null,
"cdna_length": 10103,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "n.805A>C",
"hgvs_p": null,
"transcript": "ENST00000373735.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1243,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "n.*2153A>C",
"hgvs_p": null,
"transcript": "ENST00000683963.1",
"protein_id": "ENSP00000507029.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10517,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"hgvs_c": "n.*2153A>C",
"hgvs_p": null,
"transcript": "ENST00000683963.1",
"protein_id": "ENSP00000507029.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 10517,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CTNNA3",
"gene_hgnc_id": 2511,
"dbsnp": "rs374368635",
"frequency_reference_population": 0.000004336954,
"hom_count_reference_population": 0,
"allele_count_reference_population": 7,
"gnomad_exomes_af": 0.00000342033,
"gnomad_genomes_af": 0.0000131415,
"gnomad_exomes_ac": 5,
"gnomad_genomes_ac": 2,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.19994309544563293,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.085,
"revel_prediction": "Benign",
"alphamissense_score": 0.1468,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.4,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 6.215,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -6,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate,BS2",
"acmg_by_gene": [
{
"score": -6,
"benign_score": 6,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BS2"
],
"verdict": "Likely_benign",
"transcript": "NM_013266.4",
"gene_symbol": "CTNNA3",
"hgnc_id": 2511,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD,Unknown",
"hgvs_c": "c.2629A>C",
"hgvs_p": "p.Lys877Gln"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}