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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-68142972-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=68142972&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 68142972,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_032578.4",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "NM_032578.4",
"protein_id": "NP_115967.2",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 1320,
"cds_start": 935,
"cds_end": null,
"cds_length": 3963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000358913.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_032578.4"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "ENST00000358913.10",
"protein_id": "ENSP00000351790.5",
"transcript_support_level": 1,
"aa_start": 312,
"aa_end": null,
"aa_length": 1320,
"cds_start": 935,
"cds_end": null,
"cds_length": 3963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_032578.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000358913.10"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.989C>T",
"hgvs_p": "p.Ser330Phe",
"transcript": "ENST00000540630.6",
"protein_id": "ENSP00000441668.3",
"transcript_support_level": 1,
"aa_start": 330,
"aa_end": null,
"aa_length": 1338,
"cds_start": 989,
"cds_end": null,
"cds_length": 4017,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000540630.6"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "ENST00000613327.5",
"protein_id": "ENSP00000480757.2",
"transcript_support_level": 1,
"aa_start": 312,
"aa_end": null,
"aa_length": 1320,
"cds_start": 935,
"cds_end": null,
"cds_length": 3963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000613327.5"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.110C>T",
"hgvs_p": "p.Ser37Phe",
"transcript": "ENST00000354393.7",
"protein_id": "ENSP00000346369.2",
"transcript_support_level": 1,
"aa_start": 37,
"aa_end": null,
"aa_length": 1045,
"cds_start": 110,
"cds_end": null,
"cds_length": 3138,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000354393.7"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "NM_001256267.2",
"protein_id": "NP_001243196.1",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 1320,
"cds_start": 935,
"cds_end": null,
"cds_length": 3963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001256267.2"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.53C>T",
"hgvs_p": "p.Ser18Phe",
"transcript": "NM_001256268.2",
"protein_id": "NP_001243197.1",
"transcript_support_level": null,
"aa_start": 18,
"aa_end": null,
"aa_length": 1026,
"cds_start": 53,
"cds_end": null,
"cds_length": 3081,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001256268.2"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "ENST00000373675.4",
"protein_id": "ENSP00000362779.4",
"transcript_support_level": 2,
"aa_start": 312,
"aa_end": null,
"aa_length": 658,
"cds_start": 935,
"cds_end": null,
"cds_length": 1977,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000373675.4"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.1007C>T",
"hgvs_p": "p.Ser336Phe",
"transcript": "ENST00000685006.1",
"protein_id": "ENSP00000510318.1",
"transcript_support_level": null,
"aa_start": 336,
"aa_end": null,
"aa_length": 509,
"cds_start": 1007,
"cds_end": null,
"cds_length": 1531,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000685006.1"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "ENST00000685154.1",
"protein_id": "ENSP00000509251.1",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 485,
"cds_start": 935,
"cds_end": null,
"cds_length": 1459,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000685154.1"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "ENST00000692979.1",
"protein_id": "ENSP00000509849.1",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 485,
"cds_start": 935,
"cds_end": null,
"cds_length": 1459,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000692979.1"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.1013C>T",
"hgvs_p": "p.Ser338Phe",
"transcript": "XM_017016833.2",
"protein_id": "XP_016872322.1",
"transcript_support_level": null,
"aa_start": 338,
"aa_end": null,
"aa_length": 1346,
"cds_start": 1013,
"cds_end": null,
"cds_length": 4041,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017016833.2"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.1013C>T",
"hgvs_p": "p.Ser338Phe",
"transcript": "XM_047425876.1",
"protein_id": "XP_047281832.1",
"transcript_support_level": null,
"aa_start": 338,
"aa_end": null,
"aa_length": 1346,
"cds_start": 1013,
"cds_end": null,
"cds_length": 4041,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047425876.1"
},
{
"aa_ref": "S",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.935C>T",
"hgvs_p": "p.Ser312Phe",
"transcript": "XM_017016834.3",
"protein_id": "XP_016872323.1",
"transcript_support_level": null,
"aa_start": 312,
"aa_end": null,
"aa_length": 1320,
"cds_start": 935,
"cds_end": null,
"cds_length": 3963,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017016834.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.-188C>T",
"hgvs_p": null,
"transcript": "ENST00000687572.1",
"protein_id": "ENSP00000510427.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 282,
"cds_start": null,
"cds_end": null,
"cds_length": 851,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000687572.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.-188C>T",
"hgvs_p": null,
"transcript": "ENST00000689484.1",
"protein_id": "ENSP00000509884.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 111,
"cds_start": null,
"cds_end": null,
"cds_length": 337,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000689484.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.-188C>T",
"hgvs_p": null,
"transcript": "ENST00000689797.1",
"protein_id": "ENSP00000510689.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 111,
"cds_start": null,
"cds_end": null,
"cds_length": 337,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000689797.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.-188C>T",
"hgvs_p": null,
"transcript": "XM_047425877.1",
"protein_id": "XP_047281833.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 946,
"cds_start": null,
"cds_end": null,
"cds_length": 2841,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047425877.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.-188C>T",
"hgvs_p": null,
"transcript": "XM_047425878.1",
"protein_id": "XP_047281834.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 946,
"cds_start": null,
"cds_end": null,
"cds_length": 2841,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047425878.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "c.-188C>T",
"hgvs_p": null,
"transcript": "XM_047425879.1",
"protein_id": "XP_047281835.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 946,
"cds_start": null,
"cds_end": null,
"cds_length": 2841,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047425879.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "n.1172C>T",
"hgvs_p": null,
"transcript": "ENST00000685060.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000685060.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYPN",
"gene_hgnc_id": 23246,
"hgvs_c": "n.*946C>T",
"hgvs_p": null,
"transcript": "ENST00000685627.1",
"protein_id": "ENSP00000508637.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000685627.1"
},
{
"aa_ref": null,
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"canonical": false,
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],
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"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
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"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.62,
"revel_prediction": "Uncertain_significance",
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"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.18,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 4.978,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"acmg_score": 5,
"acmg_classification": "Uncertain_significance",
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"acmg_by_gene": [
{
"score": 5,
"benign_score": 0,
"pathogenic_score": 5,
"criteria": [
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"PP3_Moderate",
"PP5"
],
"verdict": "Uncertain_significance",
"transcript": "NM_032578.4",
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"effects": [
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],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.935C>T",
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],
"clinvar_disease": "Hypertrophic cardiomyopathy,not provided,not specified",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "LP:1 US:2",
"phenotype_combined": "not provided|not specified|Hypertrophic cardiomyopathy",
"pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
"custom_annotations": null
}
],
"message": null
}