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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-72368375-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=72368375&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 72368375,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_001195518.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1271-20G>C",
"hgvs_p": null,
"transcript": "NM_001195518.2",
"protein_id": "NP_001182447.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 476,
"cds_start": -4,
"cds_end": null,
"cds_length": 1431,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2357,
"mane_select": "ENST00000361114.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1271-20G>C",
"hgvs_p": null,
"transcript": "ENST00000361114.10",
"protein_id": "ENSP00000354415.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 476,
"cds_start": -4,
"cds_end": null,
"cds_length": 1431,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2357,
"mane_select": "NM_001195518.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1502-20G>C",
"hgvs_p": null,
"transcript": "NM_001441218.1",
"protein_id": "NP_001428147.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 553,
"cds_start": -4,
"cds_end": null,
"cds_length": 1662,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2588,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1439-20G>C",
"hgvs_p": null,
"transcript": "NM_001441219.1",
"protein_id": "NP_001428148.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 532,
"cds_start": -4,
"cds_end": null,
"cds_length": 1599,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1289-20G>C",
"hgvs_p": null,
"transcript": "NM_001363513.2",
"protein_id": "NP_001350442.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 482,
"cds_start": -4,
"cds_end": null,
"cds_length": 1449,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2375,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1289-20G>C",
"hgvs_p": null,
"transcript": "ENST00000642044.1",
"protein_id": "ENSP00000493232.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 482,
"cds_start": -4,
"cds_end": null,
"cds_length": 1449,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2221,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1283-20G>C",
"hgvs_p": null,
"transcript": "ENST00000635239.1",
"protein_id": "ENSP00000489563.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 480,
"cds_start": -4,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2215,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1277-20G>C",
"hgvs_p": null,
"transcript": "NM_006077.4",
"protein_id": "NP_006068.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 478,
"cds_start": -4,
"cds_end": null,
"cds_length": 1437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2363,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1271-20G>C",
"hgvs_p": null,
"transcript": "NM_001441220.1",
"protein_id": "NP_001428149.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 476,
"cds_start": -4,
"cds_end": null,
"cds_length": 1431,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2473,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1271-20G>C",
"hgvs_p": null,
"transcript": "NM_001441221.1",
"protein_id": "NP_001428150.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 476,
"cds_start": -4,
"cds_end": null,
"cds_length": 1431,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2491,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1271-20G>C",
"hgvs_p": null,
"transcript": "NM_001441222.1",
"protein_id": "NP_001428151.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 476,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2451,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1271-20G>C",
"hgvs_p": null,
"transcript": "NM_001441223.1",
"protein_id": "NP_001428152.1",
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1259-20G>C",
"hgvs_p": null,
"transcript": "NM_001441224.1",
"protein_id": "NP_001428153.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1181-20G>C",
"hgvs_p": null,
"transcript": "NM_001441225.1",
"protein_id": "NP_001428154.1",
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},
{
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"strand": false,
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],
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"intron_rank": 11,
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"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1172-20G>C",
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"transcript": "NM_001441226.1",
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 10,
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"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.1148-20G>C",
"hgvs_p": null,
"transcript": "NM_001441227.1",
"protein_id": "NP_001428156.1",
"transcript_support_level": null,
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},
{
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],
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"intron_rank": 9,
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"gene_symbol": "MICU1",
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"hgvs_c": "c.938-20G>C",
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"transcript": "NM_001441228.1",
"protein_id": "NP_001428157.1",
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.875-20G>C",
"hgvs_p": null,
"transcript": "NM_001441229.1",
"protein_id": "NP_001428158.1",
"transcript_support_level": null,
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"cds_start": -4,
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"mane_select": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 12,
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"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.776-20G>C",
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"transcript": "NM_001441230.1",
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},
{
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],
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"gene_symbol": "MICU1",
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"transcript": "NM_001195519.2",
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},
{
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"strand": false,
"consequences": [
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],
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"gene_symbol": "MICU1",
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"transcript": "NM_001441231.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.677-20G>C",
"hgvs_p": null,
"transcript": "ENST00000398763.8",
"protein_id": "ENSP00000381747.4",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"hgvs_c": "c.677-20G>C",
"hgvs_p": null,
"transcript": "ENST00000418483.6",
"protein_id": "ENSP00000402470.2",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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},
{
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},
{
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},
{
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],
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"transcript": "ENST00000476605.7",
"protein_id": "ENSP00000432492.3",
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},
{
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],
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},
{
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],
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"gene_symbol": "MICU1",
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},
{
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"consequences": [
"intron_variant"
],
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"gene_symbol": "MICU1",
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"hgvs_c": "n.1462-20G>C",
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"transcript": "NR_199811.1",
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}
],
"gene_symbol": "MICU1",
"gene_hgnc_id": 1530,
"dbsnp": "rs2132024005",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.49000000953674316,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.49,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.276,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP6_Moderate",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 6,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "NM_001195518.2",
"gene_symbol": "MICU1",
"hgnc_id": 1530,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
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}
],
"clinvar_disease": "not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}