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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-74118091-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=74118091&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 74118091,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "NM_014000.3",
"consequences": [
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3327T>C",
"hgvs_p": "p.Ala1109Ala",
"transcript": "NM_014000.3",
"protein_id": "NP_054706.1",
"transcript_support_level": null,
"aa_start": 1109,
"aa_end": null,
"aa_length": 1134,
"cds_start": 3327,
"cds_end": null,
"cds_length": 3405,
"cdna_start": 3419,
"cdna_end": null,
"cdna_length": 5497,
"mane_select": "ENST00000211998.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014000.3"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3327T>C",
"hgvs_p": "p.Ala1109Ala",
"transcript": "ENST00000211998.10",
"protein_id": "ENSP00000211998.5",
"transcript_support_level": 1,
"aa_start": 1109,
"aa_end": null,
"aa_length": 1134,
"cds_start": 3327,
"cds_end": null,
"cds_length": 3405,
"cdna_start": 3419,
"cdna_end": null,
"cdna_length": 5497,
"mane_select": "NM_014000.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000211998.10"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3123T>C",
"hgvs_p": "p.Ala1041Ala",
"transcript": "ENST00000372755.7",
"protein_id": "ENSP00000361841.3",
"transcript_support_level": 1,
"aa_start": 1041,
"aa_end": null,
"aa_length": 1066,
"cds_start": 3123,
"cds_end": null,
"cds_length": 3201,
"cdna_start": 3217,
"cdna_end": null,
"cdna_length": 6489,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372755.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "n.5926T>C",
"hgvs_p": null,
"transcript": "ENST00000623461.3",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7995,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000623461.3"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3402T>C",
"hgvs_p": "p.Ala1134Ala",
"transcript": "ENST00000881823.1",
"protein_id": "ENSP00000551882.1",
"transcript_support_level": null,
"aa_start": 1134,
"aa_end": null,
"aa_length": 1159,
"cds_start": 3402,
"cds_end": null,
"cds_length": 3480,
"cdna_start": 3496,
"cdna_end": null,
"cdna_length": 5574,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881823.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3330T>C",
"hgvs_p": "p.Ala1110Ala",
"transcript": "ENST00000881824.1",
"protein_id": "ENSP00000551883.1",
"transcript_support_level": null,
"aa_start": 1110,
"aa_end": null,
"aa_length": 1135,
"cds_start": 3330,
"cds_end": null,
"cds_length": 3408,
"cdna_start": 3424,
"cdna_end": null,
"cdna_length": 5493,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881824.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3255T>C",
"hgvs_p": "p.Ala1085Ala",
"transcript": "ENST00000881826.1",
"protein_id": "ENSP00000551885.1",
"transcript_support_level": null,
"aa_start": 1085,
"aa_end": null,
"aa_length": 1110,
"cds_start": 3255,
"cds_end": null,
"cds_length": 3333,
"cdna_start": 3349,
"cdna_end": null,
"cdna_length": 5289,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881826.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3198T>C",
"hgvs_p": "p.Ala1066Ala",
"transcript": "ENST00000965705.1",
"protein_id": "ENSP00000635764.1",
"transcript_support_level": null,
"aa_start": 1066,
"aa_end": null,
"aa_length": 1091,
"cds_start": 3198,
"cds_end": null,
"cds_length": 3276,
"cdna_start": 3262,
"cdna_end": null,
"cdna_length": 5180,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965705.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3126T>C",
"hgvs_p": "p.Ala1042Ala",
"transcript": "ENST00000881828.1",
"protein_id": "ENSP00000551887.1",
"transcript_support_level": null,
"aa_start": 1042,
"aa_end": null,
"aa_length": 1067,
"cds_start": 3126,
"cds_end": null,
"cds_length": 3204,
"cdna_start": 3218,
"cdna_end": null,
"cdna_length": 3339,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881828.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3123T>C",
"hgvs_p": "p.Ala1041Ala",
"transcript": "NM_003373.4",
"protein_id": "NP_003364.1",
"transcript_support_level": null,
"aa_start": 1041,
"aa_end": null,
"aa_length": 1066,
"cds_start": 3123,
"cds_end": null,
"cds_length": 3201,
"cdna_start": 3215,
"cdna_end": null,
"cdna_length": 6487,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_003373.4"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.3120T>C",
"hgvs_p": "p.Ala1040Ala",
"transcript": "ENST00000927510.1",
"protein_id": "ENSP00000597569.1",
"transcript_support_level": null,
"aa_start": 1040,
"aa_end": null,
"aa_length": 1065,
"cds_start": 3120,
"cds_end": null,
"cds_length": 3198,
"cdna_start": 3212,
"cdna_end": null,
"cdna_length": 5281,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000927510.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.2997T>C",
"hgvs_p": "p.Ala999Ala",
"transcript": "ENST00000881827.1",
"protein_id": "ENSP00000551886.1",
"transcript_support_level": null,
"aa_start": 999,
"aa_end": null,
"aa_length": 1024,
"cds_start": 2997,
"cds_end": null,
"cds_length": 3075,
"cdna_start": 3077,
"cdna_end": null,
"cdna_length": 3731,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881827.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.2973T>C",
"hgvs_p": "p.Ala991Ala",
"transcript": "ENST00000927511.1",
"protein_id": "ENSP00000597570.1",
"transcript_support_level": null,
"aa_start": 991,
"aa_end": null,
"aa_length": 1016,
"cds_start": 2973,
"cds_end": null,
"cds_length": 3051,
"cdna_start": 3064,
"cdna_end": null,
"cdna_length": 5133,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000927511.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.2919T>C",
"hgvs_p": "p.Ala973Ala",
"transcript": "ENST00000927509.1",
"protein_id": "ENSP00000597568.1",
"transcript_support_level": null,
"aa_start": 973,
"aa_end": null,
"aa_length": 998,
"cds_start": 2919,
"cds_end": null,
"cds_length": 2997,
"cdna_start": 3011,
"cdna_end": null,
"cdna_length": 5080,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000927509.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 15,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.2340T>C",
"hgvs_p": "p.Ala780Ala",
"transcript": "ENST00000881825.1",
"protein_id": "ENSP00000551884.1",
"transcript_support_level": null,
"aa_start": 780,
"aa_end": null,
"aa_length": 805,
"cds_start": 2340,
"cds_end": null,
"cds_length": 2418,
"cdna_start": 2432,
"cdna_end": null,
"cdna_length": 4501,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881825.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.1110T>C",
"hgvs_p": "p.Ala370Ala",
"transcript": "ENST00000965704.1",
"protein_id": "ENSP00000635763.1",
"transcript_support_level": null,
"aa_start": 370,
"aa_end": null,
"aa_length": 395,
"cds_start": 1110,
"cds_end": null,
"cds_length": 1188,
"cdna_start": 1135,
"cdna_end": null,
"cdna_length": 3194,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965704.1"
},
{
"aa_ref": "A",
"aa_alt": "A",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "c.906T>C",
"hgvs_p": "p.Ala302Ala",
"transcript": "ENST00000927512.1",
"protein_id": "ENSP00000597571.1",
"transcript_support_level": null,
"aa_start": 302,
"aa_end": null,
"aa_length": 327,
"cds_start": 906,
"cds_end": null,
"cds_length": 984,
"cdna_start": 999,
"cdna_end": null,
"cdna_length": 3066,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000927512.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"hgvs_c": "n.*3082T>C",
"hgvs_p": null,
"transcript": "ENST00000624354.3",
"protein_id": "ENSP00000485551.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3307,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000624354.3"
}
],
"gene_symbol": "VCL",
"gene_hgnc_id": 12665,
"dbsnp": "rs397517242",
"frequency_reference_population": 0.0000054723605,
"hom_count_reference_population": 1,
"allele_count_reference_population": 8,
"gnomad_exomes_af": 0.00000547236,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 8,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.01600000075995922,
"computational_prediction_selected": "Benign",
"computational_source_selected": "REVEL",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.016,
"revel_prediction": "Benign",
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.78,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.775,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -17,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS2",
"acmg_by_gene": [
{
"score": -17,
"benign_score": 17,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BP7",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_014000.3",
"gene_symbol": "VCL",
"hgnc_id": 12665,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.3327T>C",
"hgvs_p": "p.Ala1109Ala"
}
],
"clinvar_disease": "Dilated cardiomyopathy 1W,not specified",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:2",
"phenotype_combined": "not specified|Dilated cardiomyopathy 1W",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}