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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-74708378-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=74708378&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 74708378,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_006721.4",
      "consequences": [
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.1022A>G",
          "hgvs_p": "p.His341Arg",
          "transcript": "NM_006721.4",
          "protein_id": "NP_006712.2",
          "transcript_support_level": null,
          "aa_start": 341,
          "aa_end": null,
          "aa_length": 362,
          "cds_start": 1022,
          "cds_end": null,
          "cds_length": 1089,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000539909.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006721.4"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.1022A>G",
          "hgvs_p": "p.His341Arg",
          "transcript": "ENST00000539909.6",
          "protein_id": "ENSP00000443965.2",
          "transcript_support_level": 2,
          "aa_start": 341,
          "aa_end": null,
          "aa_length": 362,
          "cds_start": 1022,
          "cds_end": null,
          "cds_length": 1089,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_006721.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000539909.6"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.971A>G",
          "hgvs_p": "p.His324Arg",
          "transcript": "ENST00000372734.5",
          "protein_id": "ENSP00000361819.3",
          "transcript_support_level": 1,
          "aa_start": 324,
          "aa_end": null,
          "aa_length": 345,
          "cds_start": 971,
          "cds_end": null,
          "cds_length": 1038,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000372734.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.*81A>G",
          "hgvs_p": null,
          "transcript": "ENST00000286621.7",
          "protein_id": "ENSP00000286621.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 347,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1044,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000286621.7"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.1055A>G",
          "hgvs_p": "p.His352Arg",
          "transcript": "ENST00000960305.1",
          "protein_id": "ENSP00000630364.1",
          "transcript_support_level": null,
          "aa_start": 352,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 1055,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000960305.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.986A>G",
          "hgvs_p": "p.His329Arg",
          "transcript": "ENST00000854556.1",
          "protein_id": "ENSP00000524615.1",
          "transcript_support_level": null,
          "aa_start": 329,
          "aa_end": null,
          "aa_length": 350,
          "cds_start": 986,
          "cds_end": null,
          "cds_length": 1053,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854556.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.971A>G",
          "hgvs_p": "p.His324Arg",
          "transcript": "NM_001123.4",
          "protein_id": "NP_001114.2",
          "transcript_support_level": null,
          "aa_start": 324,
          "aa_end": null,
          "aa_length": 345,
          "cds_start": 971,
          "cds_end": null,
          "cds_length": 1038,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001123.4"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.947A>G",
          "hgvs_p": "p.His316Arg",
          "transcript": "ENST00000854555.1",
          "protein_id": "ENSP00000524614.1",
          "transcript_support_level": null,
          "aa_start": 316,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 947,
          "cds_end": null,
          "cds_length": 1014,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000854555.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.917A>G",
          "hgvs_p": "p.His306Arg",
          "transcript": "NM_001202449.2",
          "protein_id": "NP_001189378.1",
          "transcript_support_level": null,
          "aa_start": 306,
          "aa_end": null,
          "aa_length": 327,
          "cds_start": 917,
          "cds_end": null,
          "cds_length": 984,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001202449.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.917A>G",
          "hgvs_p": "p.His306Arg",
          "transcript": "ENST00000673027.1",
          "protein_id": "ENSP00000500201.1",
          "transcript_support_level": null,
          "aa_start": 306,
          "aa_end": null,
          "aa_length": 327,
          "cds_start": 917,
          "cds_end": null,
          "cds_length": 984,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000673027.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.851A>G",
          "hgvs_p": "p.His284Arg",
          "transcript": "NM_001202450.2",
          "protein_id": "NP_001189379.1",
          "transcript_support_level": null,
          "aa_start": 284,
          "aa_end": null,
          "aa_length": 305,
          "cds_start": 851,
          "cds_end": null,
          "cds_length": 918,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001202450.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.851A>G",
          "hgvs_p": "p.His284Arg",
          "transcript": "ENST00000672429.1",
          "protein_id": "ENSP00000500292.1",
          "transcript_support_level": null,
          "aa_start": 284,
          "aa_end": null,
          "aa_length": 305,
          "cds_start": 851,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000672429.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "R",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.800A>G",
          "hgvs_p": "p.His267Arg",
          "transcript": "NM_001369124.1",
          "protein_id": "NP_001356053.1",
          "transcript_support_level": null,
          "aa_start": 267,
          "aa_end": null,
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          "cds_start": 800,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001369124.1"
        },
        {
          "aa_ref": "H",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.776A>G",
          "hgvs_p": "p.His259Arg",
          "transcript": "ENST00000933492.1",
          "protein_id": "ENSP00000603551.1",
          "transcript_support_level": null,
          "aa_start": 259,
          "aa_end": null,
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          "cds_start": 776,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.827A>G",
          "hgvs_p": "p.His276Arg",
          "transcript": "XM_017015699.2",
          "protein_id": "XP_016871188.1",
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          "cds_start": 827,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "XM_017015699.2"
        },
        {
          "aa_ref": "H",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.746A>G",
          "hgvs_p": "p.His249Arg",
          "transcript": "XM_017015703.3",
          "protein_id": "XP_016871192.1",
          "transcript_support_level": null,
          "aa_start": 249,
          "aa_end": null,
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          "cds_start": 746,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 12,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.*22A>G",
          "hgvs_p": null,
          "transcript": "ENST00000541550.6",
          "protein_id": "ENSP00000438321.2",
          "transcript_support_level": 2,
          "aa_start": null,
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          "cds_start": null,
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        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.*22A>G",
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          "transcript": "NM_001369123.1",
          "protein_id": "NP_001356052.1",
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        },
        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.*22A>G",
          "hgvs_p": null,
          "transcript": "ENST00000673352.1",
          "protein_id": "ENSP00000500056.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000673352.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADK",
          "gene_hgnc_id": 257,
          "hgvs_c": "c.*22A>G",
          "hgvs_p": null,
          "transcript": "ENST00000672604.1",
          "protein_id": "ENSP00000499911.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 178,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 537,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
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      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
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      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "acmg_score": 4,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,PP3_Moderate",
      "acmg_by_gene": [
        {
          "score": 4,
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            "PP3_Moderate"
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          "verdict": "Uncertain_significance",
          "transcript": "NM_006721.4",
          "gene_symbol": "ADK",
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          "effects": [
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          "hgvs_p": "p.His341Arg"
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      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "no assertion criteria provided",
      "clinvar_submissions_summary": "null",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.