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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-75022147-G-GGAA (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=75022147&ref=G&alt=GGAA&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 75022147,
      "ref": "G",
      "alt": "GGAA",
      "effect": "conservative_inframe_insertion",
      "transcript": "NM_012330.4",
      "consequences": [
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "NM_012330.4",
          "protein_id": "NP_036462.2",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000287239.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_012330.4"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "ENST00000287239.10",
          "protein_id": "ENSP00000287239.4",
          "transcript_support_level": 1,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_012330.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000287239.10"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2761_2763dupGAA",
          "hgvs_p": "p.Glu921dup",
          "transcript": "ENST00000372711.2",
          "protein_id": "ENSP00000361796.1",
          "transcript_support_level": 1,
          "aa_start": 922,
          "aa_end": null,
          "aa_length": 1890,
          "cds_start": 2764,
          "cds_end": null,
          "cds_length": 5673,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000372711.2"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "NM_001370136.1",
          "protein_id": "NP_001357065.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370136.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "NM_001370137.1",
          "protein_id": "NP_001357066.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370137.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "ENST00000648725.1",
          "protein_id": "ENSP00000497841.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000648725.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "ENST00000649463.1",
          "protein_id": "ENSP00000497166.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000649463.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "ENST00000912235.1",
          "protein_id": "ENSP00000582294.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912235.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "ENST00000912237.1",
          "protein_id": "ENSP00000582296.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912237.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup",
          "transcript": "ENST00000912239.1",
          "protein_id": "ENSP00000582298.1",
          "transcript_support_level": null,
          "aa_start": 1105,
          "aa_end": null,
          "aa_length": 2073,
          "cds_start": 3313,
          "cds_end": null,
          "cds_length": 6222,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912239.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.3148_3150dupGAA",
          "hgvs_p": "p.Glu1050dup",
          "transcript": "ENST00000912236.1",
          "protein_id": "ENSP00000582295.1",
          "transcript_support_level": null,
          "aa_start": 1051,
          "aa_end": null,
          "aa_length": 2019,
          "cds_start": 3151,
          "cds_end": null,
          "cds_length": 6060,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912236.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2761_2763dupGAA",
          "hgvs_p": "p.Glu921dup",
          "transcript": "NM_001256468.2",
          "protein_id": "NP_001243397.1",
          "transcript_support_level": null,
          "aa_start": 922,
          "aa_end": null,
          "aa_length": 1890,
          "cds_start": 2764,
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          "cds_length": 5673,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001256468.2"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2761_2763dupGAA",
          "hgvs_p": "p.Glu921dup",
          "transcript": "NM_001370138.1",
          "protein_id": "NP_001357067.1",
          "transcript_support_level": null,
          "aa_start": 922,
          "aa_end": null,
          "aa_length": 1890,
          "cds_start": 2764,
          "cds_end": null,
          "cds_length": 5673,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370138.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2761_2763dupGAA",
          "hgvs_p": "p.Glu921dup",
          "transcript": "ENST00000372724.6",
          "protein_id": "ENSP00000361809.2",
          "transcript_support_level": 5,
          "aa_start": 922,
          "aa_end": null,
          "aa_length": 1890,
          "cds_start": 2764,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2434_2436dupGAA",
          "hgvs_p": "p.Glu812dup",
          "transcript": "NM_001256469.2",
          "protein_id": "NP_001243398.1",
          "transcript_support_level": null,
          "aa_start": 813,
          "aa_end": null,
          "aa_length": 1781,
          "cds_start": 2437,
          "cds_end": null,
          "cds_length": 5346,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001256469.2"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2434_2436dupGAA",
          "hgvs_p": "p.Glu812dup",
          "transcript": "NM_001370139.1",
          "protein_id": "NP_001357068.1",
          "transcript_support_level": null,
          "aa_start": 813,
          "aa_end": null,
          "aa_length": 1781,
          "cds_start": 2437,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001370139.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
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          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2434_2436dupGAA",
          "hgvs_p": "p.Glu812dup",
          "transcript": "NM_001370140.1",
          "protein_id": "NP_001357069.1",
          "transcript_support_level": null,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001370140.1"
        },
        {
          "aa_ref": "N",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
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          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2434_2436dupGAA",
          "hgvs_p": "p.Glu812dup",
          "transcript": "NM_001370141.1",
          "protein_id": "NP_001357070.1",
          "transcript_support_level": null,
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          "cds_start": 2437,
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          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "NM_001370141.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
          "hgvs_c": "c.2434_2436dupGAA",
          "hgvs_p": "p.Glu812dup",
          "transcript": "NM_001370142.1",
          "protein_id": "NP_001357071.1",
          "transcript_support_level": null,
          "aa_start": 813,
          "aa_end": null,
          "aa_length": 1781,
          "cds_start": 2437,
          "cds_end": null,
          "cds_length": 5346,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001370142.1"
        },
        {
          "aa_ref": "N",
          "aa_alt": "EN",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "conservative_inframe_insertion"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KAT6B",
          "gene_hgnc_id": 17582,
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      ],
      "gene_symbol": "KAT6B",
      "gene_hgnc_id": 17582,
      "dbsnp": "rs71929101",
      "frequency_reference_population": 0.0063584205,
      "hom_count_reference_population": 21,
      "allele_count_reference_population": 10211,
      "gnomad_exomes_af": 0.00646402,
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      "gnomad_exomes_ac": 9410,
      "gnomad_genomes_ac": 801,
      "gnomad_exomes_homalt": 19,
      "gnomad_genomes_homalt": 2,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": null,
      "splice_prediction_selected": null,
      "splice_source_selected": null,
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 3.085,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": null,
      "spliceai_max_prediction": null,
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
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      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -13,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP3,BP6_Very_Strong,BS2",
      "acmg_by_gene": [
        {
          "score": -13,
          "benign_score": 13,
          "pathogenic_score": 0,
          "criteria": [
            "BP3",
            "BP6_Very_Strong",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_012330.4",
          "gene_symbol": "KAT6B",
          "hgnc_id": 17582,
          "effects": [
            "conservative_inframe_insertion"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.3310_3312dupGAA",
          "hgvs_p": "p.Glu1104dup"
        },
        {
          "score": -12,
          "benign_score": 12,
          "pathogenic_score": 0,
          "criteria": [
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            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000413431.1",
          "gene_symbol": "ENSG00000234149",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.65+2960_65+2962dupTTC",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Genitopatellar syndrome,not provided,not specified",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:3 B:2",
      "phenotype_combined": "not specified|Genitopatellar syndrome|not provided",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}