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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 10-76886023-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=76886023&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "10",
      "pos": 76886023,
      "ref": "A",
      "alt": "G",
      "effect": "3_prime_UTR_variant",
      "transcript": "NM_001161352.2",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "NM_001161352.2",
          "protein_id": "NP_001154824.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1236,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3711,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6261,
          "mane_select": "ENST00000286628.14",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000286628.14",
          "protein_id": "ENSP00000286628.8",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1236,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3711,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6261,
          "mane_select": "NM_001161352.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 29,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000639406.1",
          "protein_id": "ENSP00000491732.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1208,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3627,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5567,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 27,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000286627.10",
          "protein_id": "ENSP00000286627.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1178,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3537,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6194,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 27,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.3362+1268T>C",
          "hgvs_p": null,
          "transcript": "ENST00000640807.1",
          "protein_id": "ENSP00000491555.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1128,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3387,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3387,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 27,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.3107+1268T>C",
          "hgvs_p": null,
          "transcript": "ENST00000604624.6",
          "protein_id": "ENSP00000473714.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1043,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3132,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 11400,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": 24,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "n.*2391+1268T>C",
          "hgvs_p": null,
          "transcript": "ENST00000639691.1",
          "protein_id": "ENSP00000491040.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3145,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 29,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "n.3736+1268T>C",
          "hgvs_p": null,
          "transcript": "ENST00000639851.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3866,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "n.9143T>C",
          "hgvs_p": null,
          "transcript": "ENST00000638632.1",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 9904,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 25,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "n.*3911T>C",
          "hgvs_p": null,
          "transcript": "ENST00000638751.1",
          "protein_id": "ENSP00000492172.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4939,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "NM_001437422.1",
          "protein_id": "NP_001424351.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1222,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3669,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 6219,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "NM_001161353.2",
          "protein_id": "NP_001154825.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 6210,
          "mane_select": null,
          "mane_plus": null,
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 29,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
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          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "NM_001322837.2",
          "protein_id": "NP_001309766.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 1209,
          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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        },
        {
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          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 29,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "NM_001271519.2",
          "protein_id": "NP_001258448.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 6177,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
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          "protein_coding": true,
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            "3_prime_UTR_variant"
          ],
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          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
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          "gene_symbol": "KCNMA1",
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          "hgvs_c": "c.*1243T>C",
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        {
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          "canonical": false,
          "protein_coding": true,
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          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
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          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "NM_001322836.2",
          "protein_id": "NP_001309765.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 1181,
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          "cdna_start": null,
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          "cdna_length": 6096,
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          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000640141.1",
          "protein_id": "ENSP00000491418.1",
          "transcript_support_level": 5,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 27,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
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          "gene_symbol": "KCNMA1",
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          "hgvs_c": "c.*1243T>C",
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          "transcript": "NM_002247.4",
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        {
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          ],
          "exon_rank": 28,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000354353.9",
          "protein_id": "ENSP00000346321.6",
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        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
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          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
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          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000406533.7",
          "protein_id": "ENSP00000385552.4",
          "transcript_support_level": 5,
          "aa_start": null,
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          "cds_start": -4,
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          "cds_length": 3123,
          "cdna_start": null,
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          "cdna_length": 5639,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 26,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "KCNMA1",
          "gene_hgnc_id": 6284,
          "hgvs_c": "c.*1243T>C",
          "hgvs_p": null,
          "transcript": "ENST00000638754.1",
          "protein_id": "ENSP00000491166.1",
          "transcript_support_level": 5,
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      "computational_source_selected": "BayesDel_noAF",
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      "splice_source_selected": "max_spliceai",
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      "alphamissense_score": null,
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      "phylop100way_score": -0.361,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
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      "acmg_score": -10,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Moderate,BS1",
      "acmg_by_gene": [
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          "verdict": "Benign",
          "transcript": "NM_001161352.2",
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      "clinvar_disease": "Generalized epilepsy-paroxysmal dyskinesia syndrome",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "Generalized epilepsy-paroxysmal dyskinesia syndrome",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
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  "message": null
}