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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-7797148-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=7797148&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 7797148,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_001001973.3",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "NM_001001973.3",
"protein_id": "NP_001001973.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 298,
"cds_start": 193,
"cds_end": null,
"cds_length": 897,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000356708.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001001973.3"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000356708.12",
"protein_id": "ENSP00000349142.7",
"transcript_support_level": 1,
"aa_start": 65,
"aa_end": null,
"aa_length": 298,
"cds_start": 193,
"cds_end": null,
"cds_length": 897,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001001973.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000356708.12"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000335698.4",
"protein_id": "ENSP00000338568.4",
"transcript_support_level": 1,
"aa_start": 65,
"aa_end": null,
"aa_length": 297,
"cds_start": 193,
"cds_end": null,
"cds_length": 894,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000335698.4"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000864428.1",
"protein_id": "ENSP00000534487.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 329,
"cds_start": 193,
"cds_end": null,
"cds_length": 990,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864428.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000864424.1",
"protein_id": "ENSP00000534483.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 307,
"cds_start": 193,
"cds_end": null,
"cds_length": 924,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864424.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000864427.1",
"protein_id": "ENSP00000534486.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 304,
"cds_start": 193,
"cds_end": null,
"cds_length": 915,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864427.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "NM_005174.4",
"protein_id": "NP_005165.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 297,
"cds_start": 193,
"cds_end": null,
"cds_length": 894,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005174.4"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.151C>T",
"hgvs_p": "p.Pro51Ser",
"transcript": "ENST00000864423.1",
"protein_id": "ENSP00000534482.1",
"transcript_support_level": null,
"aa_start": 51,
"aa_end": null,
"aa_length": 284,
"cds_start": 151,
"cds_end": null,
"cds_length": 855,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864423.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000926764.1",
"protein_id": "ENSP00000596823.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 274,
"cds_start": 193,
"cds_end": null,
"cds_length": 825,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926764.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.52C>T",
"hgvs_p": "p.Pro18Ser",
"transcript": "NM_001320886.2",
"protein_id": "NP_001307815.1",
"transcript_support_level": null,
"aa_start": 18,
"aa_end": null,
"aa_length": 251,
"cds_start": 52,
"cds_end": null,
"cds_length": 756,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001320886.2"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000864425.1",
"protein_id": "ENSP00000534484.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 250,
"cds_start": 193,
"cds_end": null,
"cds_length": 753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864425.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "ENST00000926765.1",
"protein_id": "ENSP00000596824.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 144,
"cds_start": 193,
"cds_end": null,
"cds_length": 435,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000926765.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser",
"transcript": "XM_047425254.1",
"protein_id": "XP_047281210.1",
"transcript_support_level": null,
"aa_start": 65,
"aa_end": null,
"aa_length": 298,
"cds_start": 193,
"cds_end": null,
"cds_length": 897,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047425254.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.52C>T",
"hgvs_p": "p.Pro18Ser",
"transcript": "XM_017016290.2",
"protein_id": "XP_016871779.1",
"transcript_support_level": null,
"aa_start": 18,
"aa_end": null,
"aa_length": 250,
"cds_start": 52,
"cds_end": null,
"cds_length": 753,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017016290.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "c.91+993C>T",
"hgvs_p": null,
"transcript": "ENST00000864426.1",
"protein_id": "ENSP00000534485.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 254,
"cds_start": null,
"cds_end": null,
"cds_length": 765,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000864426.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "n.217C>T",
"hgvs_p": null,
"transcript": "ENST00000460820.6",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000460820.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "n.191C>T",
"hgvs_p": null,
"transcript": "ENST00000472202.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000472202.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "n.219C>T",
"hgvs_p": null,
"transcript": "ENST00000493053.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000493053.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"hgvs_c": "n.120+993C>T",
"hgvs_p": null,
"transcript": "ENST00000465936.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000465936.5"
}
],
"gene_symbol": "ATP5F1C",
"gene_hgnc_id": 833,
"dbsnp": "rs199901078",
"frequency_reference_population": 0.00026147356,
"hom_count_reference_population": 0,
"allele_count_reference_population": 422,
"gnomad_exomes_af": 0.000270209,
"gnomad_genomes_af": 0.000177517,
"gnomad_exomes_ac": 395,
"gnomad_genomes_ac": 27,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.36208415031433105,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.139,
"revel_prediction": "Benign",
"alphamissense_score": 0.2498,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.05,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 7.77,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -1,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4",
"acmg_by_gene": [
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP4"
],
"verdict": "Likely_benign",
"transcript": "NM_001001973.3",
"gene_symbol": "ATP5F1C",
"hgnc_id": 833,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.193C>T",
"hgvs_p": "p.Pro65Ser"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}