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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-79712337-CTGAAAAGACA-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=79712337&ref=CTGAAAAGACA&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 79712337,
"ref": "CTGAAAAGACA",
"alt": "C",
"effect": "frameshift_variant",
"transcript": "NM_001278495.2",
"consequences": [
{
"aa_ref": "AEKT",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUTM2B",
"gene_hgnc_id": 23445,
"hgvs_c": "c.2490_2499delTGAAAAGACA",
"hgvs_p": "p.Glu831fs",
"transcript": "NM_001278495.2",
"protein_id": "NP_001265424.1",
"transcript_support_level": null,
"aa_start": 830,
"aa_end": null,
"aa_length": 878,
"cds_start": 2490,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000429828.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278495.2"
},
{
"aa_ref": "AEKT",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUTM2B",
"gene_hgnc_id": 23445,
"hgvs_c": "c.2490_2499delTGAAAAGACA",
"hgvs_p": "p.Glu831fs",
"transcript": "ENST00000429828.7",
"protein_id": "ENSP00000394623.1",
"transcript_support_level": 5,
"aa_start": 830,
"aa_end": null,
"aa_length": 878,
"cds_start": 2490,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001278495.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000429828.7"
},
{
"aa_ref": "AEKT",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"frameshift_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUTM2B",
"gene_hgnc_id": 23445,
"hgvs_c": "c.2490_2499delTGAAAAGACA",
"hgvs_p": "p.Glu831fs",
"transcript": "XM_047425707.1",
"protein_id": "XP_047281663.1",
"transcript_support_level": null,
"aa_start": 830,
"aa_end": null,
"aa_length": 878,
"cds_start": 2490,
"cds_end": null,
"cds_length": 2637,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047425707.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B",
"gene_hgnc_id": 23445,
"hgvs_c": "c.1852-556_1852-547delTGAAAAGACA",
"hgvs_p": null,
"transcript": "ENST00000372321.6",
"protein_id": "ENSP00000361396.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 629,
"cds_start": null,
"cds_end": null,
"cds_length": 1890,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000372321.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.483-20291_483-20282delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000488805.6",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000488805.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.555-43895_555-43886delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000596088.6",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000596088.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.55-43895_55-43886delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000600376.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000600376.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.679-20291_679-20282delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000601369.7",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000601369.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.901-20291_901-20282delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000662025.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000662025.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.554-20291_554-20282delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000670682.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000670682.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.552-49113_552-49104delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000671459.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000671459.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.397-49113_397-49104delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807165.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000807165.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.475-25886_475-25877delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807166.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000807166.1"
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.354-43895_354-43886delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807167.1",
"protein_id": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000807167.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.512-43895_512-43886delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807168.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
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"aa_length": null,
"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "pseudogene",
"feature": "ENST00000807168.1"
},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.503-49113_503-49104delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807169.1",
"protein_id": null,
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"cds_start": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "pseudogene",
"feature": "ENST00000807169.1"
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.404+11568_404+11577delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807170.1",
"protein_id": null,
"transcript_support_level": null,
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"aa_length": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000807170.1"
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.830-43895_830-43886delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807171.1",
"protein_id": null,
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"biotype": "pseudogene",
"feature": "ENST00000807171.1"
},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.481-20291_481-20282delTGTCTTTTCA",
"hgvs_p": null,
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"protein_id": null,
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"feature": "ENST00000807172.1"
},
{
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"protein_coding": false,
"strand": false,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.683-20291_683-20282delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807173.1",
"protein_id": null,
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"biotype": "pseudogene",
"feature": "ENST00000807173.1"
},
{
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"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.609-20291_609-20282delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807174.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000807174.1"
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "NUTM2B-AS1",
"gene_hgnc_id": 51204,
"hgvs_c": "n.532-20357_532-20348delTGTCTTTTCA",
"hgvs_p": null,
"transcript": "ENST00000807175.1",
"protein_id": null,
"transcript_support_level": null,
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"aa_length": null,
"cds_start": null,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": null,
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{
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}
],
"message": null
}