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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-93692719-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=93692719&ref=T&alt=C&genome=hg38&allGenes=true"
API Response
json
{
"variants": [
{
"chr": "10",
"pos": 93692719,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_145246.5",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu",
"transcript": "NM_145246.5",
"protein_id": "NP_660289.2",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 315,
"cds_start": 307,
"cds_end": null,
"cds_length": 948,
"cdna_start": 525,
"cdna_end": null,
"cdna_length": 3109,
"mane_select": "ENST00000359204.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu",
"transcript": "ENST00000359204.5",
"protein_id": "ENSP00000360488.3",
"transcript_support_level": 1,
"aa_start": 103,
"aa_end": null,
"aa_length": 315,
"cds_start": 307,
"cds_end": null,
"cds_length": 948,
"cdna_start": 525,
"cdna_end": null,
"cdna_length": 3109,
"mane_select": "NM_145246.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu",
"transcript": "NM_001347712.2",
"protein_id": "NP_001334641.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 315,
"cds_start": 307,
"cds_end": null,
"cds_length": 948,
"cdna_start": 726,
"cdna_end": null,
"cdna_length": 3310,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu",
"transcript": "NM_001347713.2",
"protein_id": "NP_001334642.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 315,
"cds_start": 307,
"cds_end": null,
"cds_length": 948,
"cdna_start": 645,
"cdna_end": null,
"cdna_length": 3229,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu",
"transcript": "NM_001347714.2",
"protein_id": "NP_001334643.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 315,
"cds_start": 307,
"cds_end": null,
"cds_length": 948,
"cdna_start": 618,
"cdna_end": null,
"cdna_length": 3202,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu",
"transcript": "NM_001347715.2",
"protein_id": "NP_001334644.1",
"transcript_support_level": null,
"aa_start": 103,
"aa_end": null,
"aa_length": 315,
"cds_start": 307,
"cds_end": null,
"cds_length": 948,
"cdna_start": 602,
"cdna_end": null,
"cdna_length": 3186,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"hgvs_c": "n.525A>G",
"hgvs_p": null,
"transcript": "NR_144635.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3024,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "FRA10AC1",
"gene_hgnc_id": 1162,
"dbsnp": "rs374011831",
"frequency_reference_population": 0.00019687282,
"hom_count_reference_population": 1,
"allele_count_reference_population": 311,
"gnomad_exomes_af": 0.000210173,
"gnomad_genomes_af": 0.000072224,
"gnomad_exomes_ac": 300,
"gnomad_genomes_ac": 11,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.5502179861068726,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.481,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.525,
"alphamissense_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.05,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 7.564,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -1,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BS1_Supporting",
"acmg_by_gene": [
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BS1_Supporting"
],
"verdict": "Likely_benign",
"transcript": "NM_145246.5",
"gene_symbol": "FRA10AC1",
"hgnc_id": 1162,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.307A>G",
"hgvs_p": "p.Lys103Glu"
}
],
"clinvar_disease": "Inborn genetic diseases",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "Inborn genetic diseases",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}