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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 10-99661514-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=10&pos=99661514&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "10",
"pos": 99661514,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001349962.2",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "NM_020354.5",
"protein_id": "NP_065087.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000370489.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020354.5"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "ENST00000370489.5",
"protein_id": "ENSP00000359520.4",
"transcript_support_level": 1,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_020354.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000370489.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "ENSG00000285932",
"gene_hgnc_id": null,
"hgvs_c": "n.*654-7609C>T",
"hgvs_p": null,
"transcript": "ENST00000649102.1",
"protein_id": "ENSP00000497114.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000649102.1"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.83G>A",
"hgvs_p": "p.Arg28His",
"transcript": "NM_001349962.2",
"protein_id": "NP_001336891.1",
"transcript_support_level": null,
"aa_start": 28,
"aa_end": null,
"aa_length": 606,
"cds_start": 83,
"cds_end": null,
"cds_length": 1821,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349962.2"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "NM_001349963.2",
"protein_id": "NP_001336892.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001349963.2"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "ENST00000902361.1",
"protein_id": "ENSP00000572420.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000902361.1"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "ENST00000902362.1",
"protein_id": "ENSP00000572421.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000902362.1"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "ENST00000923207.1",
"protein_id": "ENSP00000593266.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923207.1"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "ENST00000956595.1",
"protein_id": "ENSP00000626654.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 604,
"cds_start": 77,
"cds_end": null,
"cds_length": 1815,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956595.1"
},
{
"aa_ref": "R",
"aa_alt": "H",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.77G>A",
"hgvs_p": "p.Arg26His",
"transcript": "ENST00000902359.1",
"protein_id": "ENSP00000572418.1",
"transcript_support_level": null,
"aa_start": 26,
"aa_end": null,
"aa_length": 598,
"cds_start": 77,
"cds_end": null,
"cds_length": 1797,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000902359.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"hgvs_c": "c.8+1550G>A",
"hgvs_p": null,
"transcript": "ENST00000902360.1",
"protein_id": "ENSP00000572419.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 543,
"cds_start": null,
"cds_end": null,
"cds_length": 1632,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000902360.1"
}
],
"gene_symbol": "ENTPD7",
"gene_hgnc_id": 19745,
"dbsnp": "rs143637078",
"frequency_reference_population": 0.000076839184,
"hom_count_reference_population": 0,
"allele_count_reference_population": 124,
"gnomad_exomes_af": 0.0000636283,
"gnomad_genomes_af": 0.000203752,
"gnomad_exomes_ac": 93,
"gnomad_genomes_ac": 31,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.30652353167533875,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.295,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.1749,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.26,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 5.466,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -1,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4",
"acmg_by_gene": [
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP4"
],
"verdict": "Likely_benign",
"transcript": "NM_001349962.2",
"gene_symbol": "ENTPD7",
"hgnc_id": 19745,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.83G>A",
"hgvs_p": "p.Arg28His"
},
{
"score": -1,
"benign_score": 1,
"pathogenic_score": 0,
"criteria": [
"BP4"
],
"verdict": "Likely_benign",
"transcript": "ENST00000649102.1",
"gene_symbol": "ENSG00000285932",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.*654-7609C>T",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}