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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 11-112086914-G-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=112086914&ref=G&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "11",
      "pos": 112086914,
      "ref": "G",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_003002.4",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "NM_003002.4",
          "protein_id": "NP_002993.1",
          "transcript_support_level": null,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 159,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 480,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 1339,
          "mane_select": "ENST00000375549.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "ENST00000375549.8",
          "protein_id": "ENSP00000364699.3",
          "transcript_support_level": 1,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 159,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 480,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 1339,
          "mane_select": "NM_003002.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "ENST00000528048.5",
          "protein_id": "ENSP00000436217.1",
          "transcript_support_level": 1,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 85,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 258,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 905,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000255292",
          "gene_hgnc_id": null,
          "hgvs_c": "n.7G>C",
          "hgvs_p": null,
          "transcript": "ENST00000532699.1",
          "protein_id": "ENSP00000456434.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 571,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "NM_001276506.2",
          "protein_id": "NP_001263435.1",
          "transcript_support_level": null,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 143,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 432,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 1469,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "ENST00000526592.5",
          "protein_id": "ENSP00000432005.1",
          "transcript_support_level": 3,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 143,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 432,
          "cdna_start": 16,
          "cdna_end": null,
          "cdna_length": 861,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "ENST00000528182.5",
          "protein_id": "ENSP00000435475.1",
          "transcript_support_level": 3,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 131,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 396,
          "cdna_start": 43,
          "cdna_end": null,
          "cdna_length": 754,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "NM_001276504.2",
          "protein_id": "NP_001263433.1",
          "transcript_support_level": null,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 120,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 363,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 1222,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "ENST00000525291.5",
          "protein_id": "ENSP00000436669.1",
          "transcript_support_level": 3,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 120,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 363,
          "cdna_start": 16,
          "cdna_end": null,
          "cdna_length": 790,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "ENST00000528021.6",
          "protein_id": "ENSP00000432465.1",
          "transcript_support_level": 3,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 104,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 315,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 1074,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu",
          "transcript": "NM_001276503.2",
          "protein_id": "NP_001263432.1",
          "transcript_support_level": null,
          "aa_start": 3,
          "aa_end": null,
          "aa_length": 85,
          "cds_start": 7,
          "cds_end": null,
          "cds_length": 258,
          "cdna_start": 42,
          "cdna_end": null,
          "cdna_length": 1194,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000255292",
          "gene_hgnc_id": null,
          "hgvs_c": "n.12G>C",
          "hgvs_p": null,
          "transcript": "ENST00000525987.5",
          "protein_id": null,
          "transcript_support_level": 4,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "n.7G>C",
          "hgvs_p": null,
          "transcript": "ENST00000530923.6",
          "protein_id": "ENSP00000432946.2",
          "transcript_support_level": 5,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_length": 762,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000255292",
          "gene_hgnc_id": null,
          "hgvs_c": "n.7G>C",
          "hgvs_p": null,
          "transcript": "ENST00000531744.5",
          "protein_id": "ENSP00000456957.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
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          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 566,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
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          "hgvs_c": "n.7G>C",
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          "transcript": "ENST00000534010.2",
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "n.7G>C",
          "hgvs_p": null,
          "transcript": "ENST00000640554.1",
          "protein_id": "ENSP00000491141.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cdna_length": 727,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "n.7G>C",
          "hgvs_p": null,
          "transcript": "ENST00000714087.1",
          "protein_id": "ENSP00000519378.1",
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          "aa_end": null,
          "aa_length": null,
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          "cdna_start": null,
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          "cdna_length": 1456,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "n.7G>C",
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          "transcript": "ENST00000714090.1",
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          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "n.7G>C",
          "hgvs_p": null,
          "transcript": "ENST00000714091.1",
          "protein_id": "ENSP00000519382.1",
          "transcript_support_level": null,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SDHD",
          "gene_hgnc_id": 10683,
          "hgvs_c": "n.42G>C",
          "hgvs_p": null,
          "transcript": "NR_077060.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1393,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TIMM8B",
          "gene_hgnc_id": 11818,
          "hgvs_c": "c.-191C>G",
          "hgvs_p": null,
          "transcript": "NM_012459.4",
          "protein_id": "NP_036591.3",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 83,
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        },
        {
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          ],
          "exon_rank": null,
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          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "TIMM8B",
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          "hgvs_c": "n.-158C>G",
          "hgvs_p": null,
          "transcript": "NR_028383.2",
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          "cdna_length": 1084,
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        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "upstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "TIMM8B",
          "gene_hgnc_id": 11818,
          "hgvs_c": "n.-158C>G",
          "hgvs_p": null,
          "transcript": "NR_160400.1",
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          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1095,
          "mane_select": null,
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          "biotype": null,
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        }
      ],
      "gene_symbol": "SDHD",
      "gene_hgnc_id": 10683,
      "dbsnp": "rs1555186656",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.1110566258430481,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.009999999776482582,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.416,
      "revel_prediction": "Uncertain_significance",
      "alphamissense_score": 0.1088,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.07,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 0.04,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_003002.4",
          "gene_symbol": "SDHD",
          "hgnc_id": 10683,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.7G>C",
          "hgvs_p": "p.Val3Leu"
        },
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000532699.1",
          "gene_symbol": "ENSG00000255292",
          "hgnc_id": null,
          "effects": [
            "non_coding_transcript_exon_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.7G>C",
          "hgvs_p": null
        },
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_012459.4",
          "gene_symbol": "TIMM8B",
          "hgnc_id": 11818,
          "effects": [
            "upstream_gene_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.-191C>G",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Carney-Stratakis syndrome,Cowden syndrome 3,Paragangliomas with sensorineural hearing loss,Pheochromocytoma",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "Carney-Stratakis syndrome;Pheochromocytoma;Paragangliomas with sensorineural hearing loss;Cowden syndrome 3",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}