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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-117289719-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=117289719&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 117289719,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_012104.6",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1353T>G",
"hgvs_p": "p.Asp451Glu",
"transcript": "NM_012104.6",
"protein_id": "NP_036236.1",
"transcript_support_level": null,
"aa_start": 451,
"aa_end": null,
"aa_length": 501,
"cds_start": 1353,
"cds_end": null,
"cds_length": 1506,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000313005.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_012104.6"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1353T>G",
"hgvs_p": "p.Asp451Glu",
"transcript": "ENST00000313005.11",
"protein_id": "ENSP00000318585.6",
"transcript_support_level": 1,
"aa_start": 451,
"aa_end": null,
"aa_length": 501,
"cds_start": 1353,
"cds_end": null,
"cds_length": 1506,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_012104.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000313005.11"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1278T>G",
"hgvs_p": "p.Asp426Glu",
"transcript": "ENST00000513780.5",
"protein_id": "ENSP00000424536.1",
"transcript_support_level": 1,
"aa_start": 426,
"aa_end": null,
"aa_length": 476,
"cds_start": 1278,
"cds_end": null,
"cds_length": 1431,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000513780.5"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1221T>G",
"hgvs_p": "p.Asp407Glu",
"transcript": "ENST00000445823.6",
"protein_id": "ENSP00000403685.2",
"transcript_support_level": 1,
"aa_start": 407,
"aa_end": null,
"aa_length": 457,
"cds_start": 1221,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000445823.6"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1146T>G",
"hgvs_p": "p.Asp382Glu",
"transcript": "ENST00000428381.6",
"protein_id": "ENSP00000402228.2",
"transcript_support_level": 1,
"aa_start": 382,
"aa_end": null,
"aa_length": 432,
"cds_start": 1146,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000428381.6"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1053T>G",
"hgvs_p": "p.Asp351Glu",
"transcript": "ENST00000392937.10",
"protein_id": "ENSP00000475405.1",
"transcript_support_level": 1,
"aa_start": 351,
"aa_end": null,
"aa_length": 401,
"cds_start": 1053,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000392937.10"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1278T>G",
"hgvs_p": "p.Asp426Glu",
"transcript": "NM_138972.4",
"protein_id": "NP_620428.1",
"transcript_support_level": null,
"aa_start": 426,
"aa_end": null,
"aa_length": 476,
"cds_start": 1278,
"cds_end": null,
"cds_length": 1431,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_138972.4"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1251T>G",
"hgvs_p": "p.Asp417Glu",
"transcript": "ENST00000528053.5",
"protein_id": "ENSP00000431848.1",
"transcript_support_level": 5,
"aa_start": 417,
"aa_end": null,
"aa_length": 467,
"cds_start": 1251,
"cds_end": null,
"cds_length": 1404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000528053.5"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1221T>G",
"hgvs_p": "p.Asp407Glu",
"transcript": "NM_138971.4",
"protein_id": "NP_620427.1",
"transcript_support_level": null,
"aa_start": 407,
"aa_end": null,
"aa_length": 457,
"cds_start": 1221,
"cds_end": null,
"cds_length": 1374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_138971.4"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1218T>G",
"hgvs_p": "p.Asp406Glu",
"transcript": "ENST00000927849.1",
"protein_id": "ENSP00000597908.1",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 456,
"cds_start": 1218,
"cds_end": null,
"cds_length": 1371,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000927849.1"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1215T>G",
"hgvs_p": "p.Asp405Glu",
"transcript": "ENST00000896512.1",
"protein_id": "ENSP00000566571.1",
"transcript_support_level": null,
"aa_start": 405,
"aa_end": null,
"aa_length": 455,
"cds_start": 1215,
"cds_end": null,
"cds_length": 1368,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000896512.1"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1146T>G",
"hgvs_p": "p.Asp382Glu",
"transcript": "NM_138973.4",
"protein_id": "NP_620429.1",
"transcript_support_level": null,
"aa_start": 382,
"aa_end": null,
"aa_length": 432,
"cds_start": 1146,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_138973.4"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.1053T>G",
"hgvs_p": "p.Asp351Glu",
"transcript": "NM_001207048.3",
"protein_id": "NP_001193977.1",
"transcript_support_level": null,
"aa_start": 351,
"aa_end": null,
"aa_length": 401,
"cds_start": 1053,
"cds_end": null,
"cds_length": 1206,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001207048.3"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.978T>G",
"hgvs_p": "p.Asp326Glu",
"transcript": "NM_001207049.3",
"protein_id": "NP_001193978.1",
"transcript_support_level": null,
"aa_start": 326,
"aa_end": null,
"aa_length": 376,
"cds_start": 978,
"cds_end": null,
"cds_length": 1131,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001207049.3"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.978T>G",
"hgvs_p": "p.Asp326Glu",
"transcript": "ENST00000510630.5",
"protein_id": "ENSP00000422461.1",
"transcript_support_level": 2,
"aa_start": 326,
"aa_end": null,
"aa_length": 376,
"cds_start": 978,
"cds_end": null,
"cds_length": 1131,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000510630.5"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.651T>G",
"hgvs_p": "p.Asp217Glu",
"transcript": "NM_001411039.1",
"protein_id": "NP_001397968.1",
"transcript_support_level": null,
"aa_start": 217,
"aa_end": null,
"aa_length": 267,
"cds_start": 651,
"cds_end": null,
"cds_length": 804,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001411039.1"
},
{
"aa_ref": "D",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.651T>G",
"hgvs_p": "p.Asp217Glu",
"transcript": "ENST00000680971.1",
"protein_id": "ENSP00000506107.1",
"transcript_support_level": null,
"aa_start": 217,
"aa_end": null,
"aa_length": 267,
"cds_start": 651,
"cds_end": null,
"cds_length": 804,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680971.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.*677T>G",
"hgvs_p": null,
"transcript": "ENST00000510915.6",
"protein_id": "ENSP00000475171.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 351,
"cds_start": null,
"cds_end": null,
"cds_length": 1056,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000510915.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "c.*79T>G",
"hgvs_p": null,
"transcript": "ENST00000680681.1",
"protein_id": "ENSP00000505419.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 333,
"cds_start": null,
"cds_end": null,
"cds_length": 1002,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000680681.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "n.*781T>G",
"hgvs_p": null,
"transcript": "ENST00000514464.2",
"protein_id": "ENSP00000505118.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000514464.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1-AS",
"gene_hgnc_id": 37125,
"hgvs_c": "n.1267A>C",
"hgvs_p": null,
"transcript": "ENST00000649580.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000649580.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BACE1",
"gene_hgnc_id": 933,
"hgvs_c": "n.1796T>G",
"hgvs_p": null,
"transcript": "ENST00000679585.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000679585.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
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{
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{
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{
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{
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{
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"gene_symbol": "BACE1",
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"transcript": "ENST00000514464.2",
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"biotype": "nonsense_mediated_decay",
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],
"gene_symbol": "BACE1",
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"dbsnp": "rs142581949",
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"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.567013680934906,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.009999999776482582,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.391,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.4887,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.1,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.353,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.01,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 2,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2",
"acmg_by_gene": [
{
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"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "NM_012104.6",
"gene_symbol": "BACE1",
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"effects": [
"missense_variant"
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"inheritance_mode": "AD",
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"hgvs_p": "p.Asp451Glu"
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{
"score": 2,
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"pathogenic_score": 2,
"criteria": [
"PM2"
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"verdict": "Uncertain_significance",
"transcript": "ENST00000649580.1",
"gene_symbol": "BACE1-AS",
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"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.1267A>C",
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}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}