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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-118650844-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=118650844&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 118650844,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000600882.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.3874+297A>G",
"hgvs_p": null,
"transcript": "NM_001144758.3",
"protein_id": "NP_001138230.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1377,
"cds_start": -4,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5445,
"mane_select": "ENST00000600882.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.3874+297A>G",
"hgvs_p": null,
"transcript": "ENST00000600882.6",
"protein_id": "ENSP00000469820.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1377,
"cds_start": -4,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5445,
"mane_select": "NM_001144758.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.3874+297A>G",
"hgvs_p": null,
"transcript": "ENST00000361417.6",
"protein_id": "ENSP00000354498.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1377,
"cds_start": -4,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5753,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 16,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.3813+297A>G",
"hgvs_p": null,
"transcript": "ENST00000532517.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5242,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.2010+297A>G",
"hgvs_p": null,
"transcript": "ENST00000614369.4",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3442,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.244A>G",
"hgvs_p": null,
"transcript": "ENST00000620788.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5898,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 21,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.3874+297A>G",
"hgvs_p": null,
"transcript": "NM_015157.4",
"protein_id": "NP_055972.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1377,
"cds_start": -4,
"cds_end": null,
"cds_length": 4134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.3733+297A>G",
"hgvs_p": null,
"transcript": "NM_001144759.3",
"protein_id": "NP_001138231.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1319,
"cds_start": -4,
"cds_end": null,
"cds_length": 3960,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5271,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.3733+297A>G",
"hgvs_p": null,
"transcript": "ENST00000356063.9",
"protein_id": "ENSP00000348359.5",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 1319,
"cds_start": -4,
"cds_end": null,
"cds_length": 3960,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5240,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.1699+297A>G",
"hgvs_p": null,
"transcript": "ENST00000534140.2",
"protein_id": "ENSP00000482728.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 641,
"cds_start": -4,
"cds_end": null,
"cds_length": 1926,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3128,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.1346+297A>G",
"hgvs_p": null,
"transcript": "ENST00000524713.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1591,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.1963+297A>G",
"hgvs_p": null,
"transcript": "ENST00000526537.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 2519,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.1492+297A>G",
"hgvs_p": null,
"transcript": "ENST00000527898.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.*1262+297A>G",
"hgvs_p": null,
"transcript": "ENST00000528594.5",
"protein_id": "ENSP00000435520.1",
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 22,
"intron_rank": 20,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "n.*1262+297A>G",
"hgvs_p": null,
"transcript": "ENST00000530994.5",
"protein_id": "ENSP00000431508.1",
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4501+297A>G",
"hgvs_p": null,
"transcript": "XM_011542703.3",
"protein_id": "XP_011541005.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4498+297A>G",
"hgvs_p": null,
"transcript": "XM_005277680.4",
"protein_id": "XP_005277737.1",
"transcript_support_level": null,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4501+297A>G",
"hgvs_p": null,
"transcript": "XM_011542704.3",
"protein_id": "XP_011541006.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 23,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4456+297A>G",
"hgvs_p": null,
"transcript": "XM_011542705.3",
"protein_id": "XP_011541007.1",
"transcript_support_level": null,
"aa_start": null,
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 23,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4456+297A>G",
"hgvs_p": null,
"transcript": "XM_011542706.3",
"protein_id": "XP_011541008.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 23,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4372+297A>G",
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"transcript": "XM_011542707.3",
"protein_id": "XP_011541009.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": 23,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4369+297A>G",
"hgvs_p": null,
"transcript": "XM_017017407.2",
"protein_id": "XP_016872896.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 27,
"intron_rank": 24,
"intron_rank_end": null,
"gene_symbol": "PHLDB1",
"gene_hgnc_id": 23697,
"hgvs_c": "c.4363+297A>G",
"hgvs_p": null,
"transcript": "XM_011542708.4",
"protein_id": "XP_011541010.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 1540,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
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