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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 11-120853412-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=11&pos=120853412&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "11",
"pos": 120853412,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "NM_014619.5",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_014619.5",
"protein_id": "NP_055434.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 956,
"cds_start": -4,
"cds_end": null,
"cds_length": 2871,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5815,
"mane_select": "ENST00000527524.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "ENST00000527524.8",
"protein_id": "ENSP00000435648.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 956,
"cds_start": -4,
"cds_end": null,
"cds_length": 2871,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5815,
"mane_select": "NM_014619.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "ENST00000438375.2",
"protein_id": "ENSP00000404063.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 956,
"cds_start": -4,
"cds_end": null,
"cds_length": 2871,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4214,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "n.1143-8547A>G",
"hgvs_p": null,
"transcript": "ENST00000533291.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2961,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_001282470.3",
"protein_id": "NP_001269399.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 956,
"cds_start": -4,
"cds_end": null,
"cds_length": 2871,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5859,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_001440402.1",
"protein_id": "NP_001427331.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 956,
"cds_start": -4,
"cds_end": null,
"cds_length": 2871,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6379,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "ENST00000638419.1",
"protein_id": "ENSP00000492086.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 956,
"cds_start": -4,
"cds_end": null,
"cds_length": 2871,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3593,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.744+16568A>G",
"hgvs_p": null,
"transcript": "NM_001440403.1",
"protein_id": "NP_001427332.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 902,
"cds_start": -4,
"cds_end": null,
"cds_length": 2709,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5653,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_001440404.1",
"protein_id": "NP_001427333.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 898,
"cds_start": -4,
"cds_end": null,
"cds_length": 2697,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5641,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_001440405.1",
"protein_id": "NP_001427334.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 898,
"cds_start": -4,
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"cds_length": 2697,
"cdna_start": null,
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"cdna_length": 5533,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_001440406.1",
"protein_id": "NP_001427335.1",
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"cds_start": -4,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"gene_symbol": "GRIK4",
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"hgvs_c": "c.745-8547A>G",
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"transcript": "NM_001440407.1",
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},
{
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],
"exon_rank": null,
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"exon_count": 18,
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"gene_symbol": "GRIK4",
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"hgvs_c": "c.745-8547A>G",
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"transcript": "NM_001282473.3",
"protein_id": "NP_001269402.1",
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},
{
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"strand": true,
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],
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"exon_count": 17,
"intron_rank": 7,
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"gene_symbol": "GRIK4",
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},
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],
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"gene_symbol": "GRIK4",
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"hgvs_c": "c.745-8547A>G",
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"transcript": "NM_001440409.1",
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},
{
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"strand": true,
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],
"exon_rank": null,
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"intron_rank": 6,
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"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.579+16568A>G",
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"transcript": "NM_001440410.1",
"protein_id": "NP_001427339.1",
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},
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],
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"gene_symbol": "GRIK4",
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"transcript": "NM_001440411.1",
"protein_id": "NP_001427340.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "NM_001440412.1",
"protein_id": "NP_001427341.1",
"transcript_support_level": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 10,
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"gene_symbol": "GRIK4",
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"transcript": "NM_001440413.1",
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},
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],
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},
{
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"strand": true,
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],
"exon_rank": null,
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"intron_rank": 10,
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"gene_symbol": "GRIK4",
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"transcript": "NM_001440415.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 19,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null,
"transcript": "XM_017017622.3",
"protein_id": "XP_016873111.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 888,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
}
],
"gene_symbol": "GRIK4",
"gene_hgnc_id": 4582,
"dbsnp": "rs7104543",
"frequency_reference_population": 0.49803323,
"hom_count_reference_population": 19728,
"allele_count_reference_population": 75714,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.498033,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 75714,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 19728,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9200000166893005,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.92,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.311,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "NM_014619.5",
"gene_symbol": "GRIK4",
"hgnc_id": 4582,
"effects": [
"intron_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.745-8547A>G",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}